View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13260_high_3 (Length: 655)

Name: NF13260_high_3
Description: NF13260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13260_high_3
NF13260_high_3
[»] chr7 (2 HSPs)
chr7 (15-477)||(4487193-4487655)
chr7 (468-650)||(4486993-4487176)
[»] chr5 (6 HSPs)
chr5 (32-389)||(19022871-19023228)
chr5 (32-389)||(22066770-22067127)
chr5 (468-650)||(19022423-19022601)
chr5 (468-636)||(22066319-22066483)
chr5 (387-477)||(22066500-22066590)
chr5 (387-477)||(19022623-19022714)
[»] chr8 (2 HSPs)
chr8 (198-389)||(22619698-22619889)
chr8 (34-206)||(22621256-22621428)
[»] chr3 (1 HSPs)
chr3 (470-650)||(10316650-10316831)
[»] scaffold0131 (1 HSPs)
scaffold0131 (387-610)||(13514-13759)
[»] chr2 (1 HSPs)
chr2 (38-210)||(43254850-43255026)
[»] chr6 (3 HSPs)
chr6 (235-304)||(32091515-32091584)
chr6 (390-454)||(32091979-32092045)
chr6 (387-457)||(12287137-12287209)
[»] chr1 (1 HSPs)
chr1 (387-457)||(9391906-9391978)


Alignment Details
Target: chr7 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 15 - 477
Target Start/End: Complemental strand, 4487655 - 4487193
Alignment:
Q  15 agttattcccttcaatttcattttttggtttgtatgtcaaaactgaaccagctggttttatacaaaaactggatttgttttggtgaattagttaagctgg 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4487655 agttattcccttcaatttcattttttggtttgtatgtcaaaactgaaccacctggttttatacaaaaactggatttgttttggtgaattagttaagctgg 4487556  T
Q  115 ttttgaaccattgcatgtattaaaccagtctcaacttttggttttggttgtagtcaatttatgaatcttccattcaaaacttgtttttattttggtgttg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4487555 ttttgaaccattgcatgtattaaaccagtctcaacttttggttttggttgtagtcaatttatgaatcttccattcaaaacttgtttttattttggtgttg 4487456  T
Q  215 tttgattacataatatgtatgttgagtattaattattgttacgtggcacaattgatctttatattgatataagagtagtagtgttgaattgatctagtta 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4487455 tttgattacataatatgtatgttgagtattaattattgttacgtggcacaattgatctttatattgatataagagtagtagtgttgaattgatctagtta 4487356  T
Q  315 tgtcctcnnnnnnncactttttgctagggggtatattttttgttgagaaaacataggccgaggttatcgggtttctgttttgtgaattagattcttgtct 414  Q
    |||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4487355 tgtcctcttttttacactttttgctagggggtatattttttgttgagaaaacataggccgaggttatcgggtttctattttgtgaattagattcttgtct 4487256  T
Q  415 tatcattttttctttcgaatggaacacaaactataggactgtgataggtgttgtgttgtgttg 477  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4487255 tatcattttttctttcgaatggaacacaaactataggactgtgataggtgttgtgttgtgttg 4487193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 468 - 650
Target Start/End: Complemental strand, 4487176 - 4486993
Alignment:
Q  468 tgttgtgttggaggttttgcgggtttttgtgggtctgttggctgcgtttttacttgatg-gaagtgcagttttttctttgttgcgtgggggctgtcatag 566  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4487176 tgttgtgttggaggttttgcgggtttttgtgggtctgctggctgcatttttacttgatgtgaagtgcagttttttctttgttgcgtgggggctgtcatag 4487077  T
Q  567 gtccagcaggttgttgggtgatcaataggcgaaattacagtggctgtattttgctttattttttgggtctttgctagttctgtg 650  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4487076 gtccagcaggttgttgggtgatcaataggcgtaattacaatggctgtattttgctttattttttgggtctttgctagttctgtg 4486993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 32 - 389
Target Start/End: Complemental strand, 19023228 - 19022871
Alignment:
Q  32 tcattttttggtttgtatgtcaaaactgaaccagctggttttatacaaaaactggatttgttttggtgaattagttaagctggttttgaaccattgcatg 131  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19023228 tcattttttggtttgtatgtcaaaactgaaccagccggttttatacaaaaactggatttgttttggtgaattagttaagctggttttgaaccattgcatg 19023129  T
Q  132 tattaaaccagtctcaacttttggttttggttgtagtcaatttatgaatcttccattcaaaacttgtttttattttggtgttgtttgattacataatatg 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||     
T  19023128 tattaaaccagtctcaacttttggttttggttgtagtcaatttatgaatcttttattcaaaacttgttttgattttggtgttgtttgattacataatata 19023029  T
Q  232 tatgttgagtattaattattgttacgtggcacaattgatctttatattgatataagagtagtagtgttgaattgatctagttatgtcctcnnnnnnncac 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||    
T  19023028 tatgttgagtattaattattgttacgtggcacaattgatctttatattgatataagagtagtagtgttgaattgatctagttatgtcctcttttttccac 19022929  T
Q  332 tttttgctagggggtatattttttgttgagaaaacataggccgaggttatcgggtttc 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19022928 tttttgctagggggtatattttttgttgagaaaacataggccgaggttatcaggtttc 19022871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 32 - 389
Target Start/End: Complemental strand, 22067127 - 22066770
Alignment:
Q  32 tcattttttggtttgtatgtcaaaactgaaccagctggttttatacaaaaactggatttgttttggtgaattagttaagctggttttgaaccattgcatg 131  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22067127 tcattttttggtttgtatgtcaaaactgaaccagccggttttatacaaaaactggatttgttttggtgaattagttaagcttgttttgaaccattgcatg 22067028  T
Q  132 tattaaaccagtctcaacttttggttttggttgtagtcaatttatgaatcttccattcaaaacttgtttttattttggtgttgtttgattacataatatg 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  22067027 tattaaaccagtctcaacttttggttttggttgtagtcaatttatgaatcttccattcaaaacttgttttgattttggtgttgtttgattacataatata 22066928  T
Q  232 tatgttgagtattaattattgttacgtggcacaattgatctttatattgatataagagtagtagtgttgaattgatctagttatgtcctcnnnnnnncac 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||    
T  22066927 tatgttgagtattaattattgttacgtggcacaattgatctttatattgatataagagtagtagtgttgaattgatctagttatgtcctcttttttctac 22066828  T
Q  332 tttttgctagggggtatattttttgttgagaaaacataggccgaggttatcgggtttc 389  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  22066827 tttttgctagggggtatattatttgttgagaaaacataggccgaggttatcaggtttc 22066770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 468 - 650
Target Start/End: Complemental strand, 19022601 - 19022423
Alignment:
Q  468 tgttgtgttggaggttttgcgggtttttgtgggtctgttggctgcgtttttacttgatg-gaagtgcagttttttctttgttgcgtgggggctgtcatag 566  Q
    |||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||| | |||||| |||||||||||||| ||||||| |||         
T  19022601 tgttgtgttggaggttttgcgggtttttgtcggtctgcaggctgcgtttttacttgatgtgcagtgcaattttttctttgttgtgtgggggttgt----- 19022507  T
Q  567 gtccagcaggttgttgggtgatcaataggcgaaattacagtggctgtattttgctttattttttgggtctttgctagttctgtg 650  Q
    |||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||| |||||||    
T  19022506 gtccagcaggttgtggggtgatcaataggcgtaattacggtggctgtattttgctttattttttgggtctgtgctacttctgtg 19022423  T

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Target: chr5; HSP #4
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 468 - 636
Target Start/End: Complemental strand, 22066483 - 22066319
Alignment:
Q  468 tgttgtgttggaggttttgcgggtttttgtgggtctgttggctgcgtttttacttgatg-gaagtgcagttttttctttgttgcgtgggggctgtcatag 566  Q
    ||||||||||||| |||||||||||||||||||||||  ||||||||||||||   ||| | |||||||||||||||||||||||||||||||||         
T  22066483 tgttgtgttggagattttgcgggtttttgtgggtctgcaggctgcgtttttacaatatgtgcagtgcagttttttctttgttgcgtgggggctgt----- 22066389  T
Q  567 gtccagcaggttgttgggtgatcaataggcgaaattacagtggctgtattttgctttattttttgggtct 636  Q
    |||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  22066388 gtccagcaggttgtggggtgatcaataggcgtaattacggtggctgtattttgctttattttttgggtct 22066319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 387 - 477
Target Start/End: Complemental strand, 22066590 - 22066500
Alignment:
Q  387 ttctgttttgtgaattagattcttgtcttatcattttttctttcgaatggaacacaaactataggactgtgataggtgttgtgttgtgttg 477  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22066590 ttctgttttgtgaattagattcttgtcttatcattttttctttcgaatggaacacaaactagaggactgtgataggtgttgtgttgtgttg 22066500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 387 - 477
Target Start/End: Complemental strand, 19022714 - 19022623
Alignment:
Q  387 ttctgttttgtgaattagattcttgtcttatcatttttt-ctttcgaatggaacacaaactataggactgtgataggtgttgtgttgtgttg 477  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19022714 ttctgttttgtgaattagattcttgtcttatcatttttttctttcgaatggaacacaaactagaggactgtgataggtgttgtgttgtgttg 19022623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 147; Significance: 4e-77; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 198 - 389
Target Start/End: Complemental strand, 22619889 - 22619698
Alignment:
Q  198 tttttattttggtgttgtttgattacataatatgtatgttgagtattaattattgttacgtggcacaattgatctttatattgatataagagtagtagtg 297  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22619889 ttttgattttggtgttgtttgattacataatatatatgttgagtattaattattgttacgtggcacaattgatctttatattgatataagagtagtagtg 22619790  T
Q  298 ttgaattgatctagttatgtcctcnnnnnnncactttttgctagggggtatattttttgttgagaaaacataggccgaggttatcgggtttc 389  Q
    ||||||||||||||||||||||||       |||||||||| | |||||||||||||||||||||||||||| | |||||||||||||||||    
T  22619789 ttgaattgatctagttatgtcctcttttttccactttttgccaaggggtatattttttgttgagaaaacataagtcgaggttatcgggtttc 22619698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 22621428 - 22621256
Alignment:
Q  34 attttttggtttgtatgtcaaaactgaaccagctggttttatacaaaaactggatttgttttggtgaattagttaagctggttttgaaccattgcatgta 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||| ||||||||||||||||||||||    
T  22621428 attttttggtttgtatgtcaaaactgaaccagctggttttatacaaaaactggatttctttttgtgtattagttaagttggttttgaaccattgcatgta 22621329  T
Q  134 ttaaaccagtctcaacttttggttttggttgtagtcaatttatgaatcttccattcaaaacttgtttttattt 206  Q
    || |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||    
T  22621328 ttgaaccagtctcaacttttggttttggttgtagtcaatgtatgaatcttccattaaaaacttgttttgattt 22621256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 1e-64; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 470 - 650
Target Start/End: Complemental strand, 10316831 - 10316650
Alignment:
Q  470 ttgtgttggaggttttgcgggtttttgtgggtctgttggctgcgtttttacttgatg-gaagtgcagttttttctttgttgcgtgggggctgtcataggt 568  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | | ||||||||||||||||||||||| ||||||||||||||    
T  10316831 ttgtgttggaggttttgcgggtttttgtgggtctgtaggctgtgtttttacttgatgtgcaatgcagttttttctttgttgcgtgagggctgtcataggt 10316732  T
Q  569 ccagcaggttgttgggtgatcaataggcgaaattacagtggctgtattttgctttattttttgggtctttgctagttctgtg 650  Q
    |||||||||||| |||||||||||||||| |||||| ||||||||| |||| |||||||||||||||| ||||| |||||||    
T  10316731 ccagcaggttgtggggtgatcaataggcgtaattacggtggctgtagtttgatttattttttgggtctatgctacttctgtg 10316650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 90; Significance: 4e-43; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 387 - 610
Target Start/End: Original strand, 13514 - 13759
Alignment:
Q  387 ttctgttttgtgaattagattcttgtcttatcattttttctttcgaatggaacacaaactataggactgtgataggtgttgtgttgtgttg--------- 477  Q
    |||||||||||||| ||||||| ||||||||| |||||||||| ||||||||||||||||| ||||||| | |||||||||||||||||||             
T  13514 ttctgttttgtgaaatagattcctgtcttatctttttttcttttgaatggaacacaaactagaggactgcgttaggtgttgtgttgtgttgtggctgctg 13613  T
Q  478 ------------gaggttttgcgggtttttgtgggtctgttggctgcgtttttacttgatg-gaagtgcagttttttctttgttgcgtgggggctgtcat 564  Q
                ||||||| ||||||||||||||||||| | ||||||||||| ||||||| | || || ||||||||| ||||||||||||||||||||    
T  13614 cctgttgtgtttgaggtttcgcgggtttttgtgggtctgctagctgcgtttttccttgatgtgcagcgcggttttttctatgttgcgtgggggctgtcat 13713  T
Q  565 aggtccagcaggttgttgggtgatcaataggcgaaattacagtggc 610  Q
    |||||||||||||||| | |||||||||||||  |||||| |||||    
T  13714 aggtccagcaggttgtggagtgatcaataggcataattacggtggc 13759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 38 - 210
Target Start/End: Complemental strand, 43255026 - 43254850
Alignment:
Q  38 tttggtttgtatgtcaaaactgaaccagctggttttatacaaaaactggatttgttttggtgaattagttaag--ctggttttgaaccattgcatgtatt 135  Q
    |||||||||||| ||||||  ||||  ||| |||| ||| ||| ||||||||| | |||||||||| |||  |  |||||||||| | | || ||||||     
T  43255026 tttggtttgtatttcaaaatcgaactggcttgtttgataaaaatactggatttatattggtgaattggttttggactggttttgagctagtgtatgtata 43254927  T
Q  136 aaaccagtctcaacttttggttttggttgtagtcaatttatga---atcttccattcaaaacttgtttttattttggt 210  Q
     |||||||||||| ||| ||||||||||  ||||||| |||||   |||||| |||||||||||||||| ||||||||    
T  43254926 gaaccagtctcaaattt-ggttttggtttaagtcaatatatgatgaatcttcgattcaaaacttgttttgattttggt 43254850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 32091515 - 32091584
Alignment:
Q  235 gttgagtattaattattgttacgtggcacaattgatctttatattgatataagagtagtagtgttgaatt 304  Q
    |||||||||||||| |   || |||||||| ||||||| |||||||||||||||||||||||| ||||||    
T  32091515 gttgagtattaattttctctatgtggcacagttgatctatatattgatataagagtagtagtgctgaatt 32091584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 454
Target Start/End: Original strand, 32091979 - 32092045
Alignment:
Q  390 tgttttgtgaattagattcttgtcttatcattttt--tctttcgaatggaacacaaactataggact 454  Q
    ||||||||||||||||||| | |||| | || |||  |||||| |||||||||||||||||||||||    
T  32091979 tgttttgtgaattagattcctatcttttaatctttgttctttctaatggaacacaaactataggact 32092045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 457
Target Start/End: Complemental strand, 12287209 - 12287137
Alignment:
Q  387 ttctgttttgtgaattagattcttgtcttatcattttt--tctttcgaatggaacacaaactataggactgtg 457  Q
    |||| ||||||||||||||||| | |||| | || |||  |||||| |||||||||||||||| |||||||||    
T  12287209 ttctcttttgtgaattagattcctatcttttaatctttgttctttctaatggaacacaaactacaggactgtg 12287137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 457
Target Start/End: Complemental strand, 9391978 - 9391906
Alignment:
Q  387 ttctgttttgtgaattagattcttgtcttatcattttt--tctttcgaatggaacacaaactataggactgtg 457  Q
    |||||||||||||||||||||| | | || | ||||||  |||||| |||||||||||||||| | |||||||    
T  9391978 ttctgttttgtgaattagattcctattttttaatttttgttctttctaatggaacacaaactacaagactgtg 9391906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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