View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13260_high_32 (Length: 239)
Name: NF13260_high_32
Description: NF13260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13260_high_32 |
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| [»] chr5 (9 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 1043267 - 1043044
Alignment:
| Q |
16 |
tcatgaaccgcatctacgataggtttccacgcctcaacttgctctttagtccatattcctggagtgtttggatagccttgagcagtgtctgaaacaccag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1043267 |
tcatgaaccgcatctacgataggtttccacgcctcaacttgctctttagtccatattcctggcgtgtttggatagccttgagcagtgtctgaaacaccag |
1043168 |
T |
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| Q |
116 |
tagcttcagctatgagaataccacctttagaggttctctgagaataatacttgacagcaatgggttgaggaacattgttgtatgatctcattcttgttag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1043167 |
tagcttcagctatgagaataccacctttagaggttctctgagaataatacttgacagcaatgggttgaggaacattgttgtatgatctcattcttgttag |
1043068 |
T |
|
| Q |
216 |
tggtgccaaaacaactctgaaatt |
239 |
Q |
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|||||||||||||||||||||||| |
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| T |
1043067 |
tggtgccaaaacaactctgaaatt |
1043044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 1049362 - 1049138
Alignment:
| Q |
15 |
atcatgaaccgcatctacgataggtttccacgcctcaacttgctctttagtccatattcctggagtgtttggatagccttgagcagtgtctgaaacacca |
114 |
Q |
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|||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
1049362 |
atcatgaaccgcatttacaataggtttccacgcctcaacatgctctttagtccatatacctggcgtgtttggatagccttgagcagtgtctgagacacca |
1049263 |
T |
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| Q |
115 |
gtagcttcagctatgagaataccacctttagaggttctctgagaataatacttgacagcaatgggttgaggaacattgttgtatgatctcattcttgtta |
214 |
Q |
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| T |
1049262 |
gtagcttcagctatgagaaggcctcctttagaggttctctgagaataatactcgacagcaatggtttgaggaacattgttgtatgatctcattcttgtta |
1049163 |
T |
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| Q |
215 |
gtggtgccaaaacaactctgaaatt |
239 |
Q |
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| T |
1049162 |
gcggtgccaaaacaactctgaaatt |
1049138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 1032858 - 1032638
Alignment:
| Q |
17 |
catgaaccgcatctacgataggtttccacgcctcaacttgctctttagtccatattcctggagtgtttggatagccttgagcagtgtctgaaacaccagt |
116 |
Q |
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||||||| ||||| || ||||||||||||||||| || ||||||||||||||||| ||||| |||| |||||| |||||||||||||| || ||||| || |
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| T |
1032858 |
catgaacagcatccacaataggtttccacgcctcgacatgctctttagtccatatacctggtgtgtctggatacccttgagcagtgtcagagacaccggt |
1032759 |
T |
|
| Q |
117 |
agcttcagctatgagaataccacctttagaggttctctgagaataatacttgacagcaatgggttgaggaacattgttgtatgatctcattcttgttagt |
216 |
Q |
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|
||||||||||||||||| ||||||||| || | |||||| || ||||| ||||||| ||||||||||| ||| |||||||| ||||| || ||| |
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| T |
1032758 |
agcttcagctatgagaagaccacctttggatgctctctgtgagtaatagaggacagcatgaggttgaggaacgttgccatatgatcttattctagtgagt |
1032659 |
T |
|
| Q |
217 |
ggtgccaaaacaactctgaaa |
237 |
Q |
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||||||||||||||||||||| |
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| T |
1032658 |
ggtgccaaaacaactctgaaa |
1032638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 1052181 - 1051961
Alignment:
| Q |
17 |
catgaaccgcatctacgataggtttccacgcctcaacttgctctttagtccatattcctggagtgtttggatagccttgagcagtgtctgaaacaccagt |
116 |
Q |
| |
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||||||| ||||| || ||||||||||||||||| || ||||||||||||||||| ||||| |||| |||||| |||||||||||||| || ||||| || |
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| T |
1052181 |
catgaacagcatccacaataggtttccacgcctcgacatgctctttagtccatatacctggtgtgtctggatacccttgagcagtgtcagagacaccggt |
1052082 |
T |
|
| Q |
117 |
agcttcagctatgagaataccacctttagaggttctctgagaataatacttgacagcaatgggttgaggaacattgttgtatgatctcattcttgttagt |
216 |
Q |
| |
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||||||||||||||||| ||||||||| || | |||||| || ||||| ||||||| ||||||||||| ||| |||||||| ||||| || ||| |
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| T |
1052081 |
agcttcagctatgagaagaccacctttggatgctctctgtgagtaatagaggacagcatgaggttgaggaacgttgccatatgatcttattctagtgagt |
1051982 |
T |
|
| Q |
217 |
ggtgccaaaacaactctgaaa |
237 |
Q |
| |
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||||||||||||||||||||| |
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| T |
1051981 |
ggtgccaaaacaactctgaaa |
1051961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 1070330 - 1070108
Alignment:
| Q |
16 |
tcatgaaccgcatctacgataggtttccacgcctcaacttgctctttagtccatattcctggagtgtttggatagccttgagcagtgtctgaaacaccag |
115 |
Q |
| |
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|||||||| ||||| || || |||||||| || || |||||||||||||||||||| || || |||||||||||||||||||| || || || ||||| | |
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| T |
1070330 |
tcatgaacagcatccacaatgggtttccatgcatcgacttgctctttagtccatataccaggcgtgtttggatagccttgagcggtatcagagacaccgg |
1070231 |
T |
|
| Q |
116 |
tagcttcagctatgagaataccacctttagaggttctctgagaataatacttgacagcaatgggttgaggaacattgttgtatgatctcattcttgttag |
215 |
Q |
| |
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||||||| |||||||||| |||||||||||||| ||| ||||| || || || |||| ||||| ||||| ||| ||| |||||| |||||| || |
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| T |
1070230 |
tagcttcggctatgagaagaccacctttagaggctctttgagagtagtagaggatagcatgaggttgtggaacgttgccgtaggatctctgtcttgtgag |
1070131 |
T |
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| Q |
216 |
tggtgccaaaacaactctgaaat |
238 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
1070130 |
aggtgccaaaacaactctgaaat |
1070108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 238
Target Start/End: Complemental strand, 1057981 - 1057762
Alignment:
| Q |
25 |
gcatctacgataggtttccacgcctcaacttgctctttagtccatattcctggagtgtttggatagccttgagcagtgtctgaaacaccagtagcttcag |
124 |
Q |
| |
|
||||| || ||||||||||||||||| || |||||||||||||| || ||||| |||| |||||| |||||||| ||||| || | ||| |||||||| | |
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| T |
1057981 |
gcatccacaataggtttccacgcctcgacgtgctctttagtccaaatacctggcgtgtctggatacccttgagcggtgtcagatataccggtagcttcgg |
1057882 |
T |
|
| Q |
125 |
ctatgagaataccacctttaga------ggttctctgagaataatacttgacagcaatgggttgaggaacattgttgtatgatctcattcttgttagtgg |
218 |
Q |
| |
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|||||||| ||| || ||||| | ||||||||| ||||| || |||| ||||| ||||||||| || ||||| ||||||| ||||| |
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| T |
1057881 |
ttatgagaagacctccgttagaaccggctgctctctgagagtaatagaggatagcatgaggttgtggaacattgccataggatctgtttcttgtgagtgg |
1057782 |
T |
|
| Q |
219 |
tgccaaaacaactctgaaat |
238 |
Q |
| |
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|||||||||||||||||||| |
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| T |
1057781 |
tgccaaaacaactctgaaat |
1057762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 1065025 - 1064895
Alignment:
| Q |
17 |
catgaaccgcatctacgataggtttccacgcctcaacttgctctttagtccatattcctggagtgtttggatagccttgagcagtgtctgaaacaccagt |
116 |
Q |
| |
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||||||| ||||| || || |||||||| ||||| || |||||||||||||| || ||||| || | |||||| |||||||| ||||| || ||||| || |
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| T |
1065025 |
catgaacagcatccacaatgggtttccatgcctcgacatgctctttagtccaaatacctggcgtatctggatacccttgagcggtgtcagagacaccggt |
1064926 |
T |
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| Q |
117 |
agcttcagctatgagaataccacctttagag |
147 |
Q |
| |
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|||||| | |||||||| ||| || |||||| |
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| T |
1064925 |
agcttcggttatgagaagacctccgttagag |
1064895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 1045948 - 1045880
Alignment:
| Q |
17 |
catgaaccgcatctacgataggtttccacgcctcaacttgctctttagtccatattcctggagtgtttg |
85 |
Q |
| |
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||||||| ||||| ||||||||||||||||| || ||||||||||| |||||||| || || ||||||| |
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| T |
1045948 |
catgaacagcatccacgataggtttccacgcttcgacttgctcttttgtccatatgccaggtgtgtttg |
1045880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 203
Target Start/End: Complemental strand, 1045791 - 1045679
Alignment:
| Q |
91 |
ccttgagcagtgtctgaaacaccagtagcttcagctatgagaataccacctttagaggttctctgagaataatacttgacagcaatgggttgaggaacat |
190 |
Q |
| |
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||||||||||| || || || || |||||||||| |||||||| |||||||| ||||| || ||||| ||||| ||||||| ||||||||| | |
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| T |
1045791 |
ccttgagcagtttcagagaccccggtagcttcagatatgagaagaccaccttcagaggccctttgagagtaatataggacagcatgctgttgaggaatgt |
1045692 |
T |
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| Q |
191 |
tgttgtatgatct |
203 |
Q |
| |
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||||||||||||| |
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| T |
1045691 |
tgttgtatgatct |
1045679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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