View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13260_high_6 (Length: 523)

Name: NF13260_high_6
Description: NF13260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13260_high_6
NF13260_high_6
[»] chr2 (15 HSPs)
chr2 (9-507)||(8394494-8394994)
chr2 (9-488)||(8412455-8412934)
chr2 (9-488)||(8434553-8435032)
chr2 (9-234)||(8406335-8406560)
chr2 (9-234)||(8395012-8395237)
chr2 (22-274)||(8431496-8431743)
chr2 (79-215)||(8417746-8417882)
chr2 (79-215)||(8375339-8375475)
chr2 (327-469)||(8431775-8431914)
chr2 (327-469)||(8406694-8406833)
chr2 (79-215)||(8439628-8439764)
chr2 (103-222)||(8368812-8368931)
chr2 (103-222)||(8400479-8400598)
chr2 (103-222)||(8422056-8422175)
chr2 (86-220)||(8404470-8404604)


Alignment Details
Target: chr2 (Bit Score: 474; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 9 - 507
Target Start/End: Complemental strand, 8394994 - 8394494
Alignment:
Q  9 agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgaga 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8394994 agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgaga 8394895  T
Q  109 gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctaatacagcttccaaga 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8394894 gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaaga 8394795  T
Q  209 ctgcatagagttgaactgtagcattagaatttgtagaatgcttttgttgttgatcttgtaatatttgtgtgatgttgttgttttctaataatggagtatt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8394794 ctgcatagagttgaactgtagcattagaatttgtagaatgcttttgttgttgatcttgtaatatttgtgtgatgttgttgttttctaataatggagtatt 8394695  T
Q  309 tttgtactgtttgattacttttagttcttgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagttttgggagatggattgaa 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8394694 tttgtactgtttgattacttttagttcttgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagttttgggagatggattgaa 8394595  T
Q  409 gcattgattactctatttgaagacgacgataaagaacaagaaagtagaactgaagtttgtatcgaagacatgatat--atattatttgaaggtatttatt 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||| ||||||    
T  8394594 gcattgattactctatttgaagacgacgataaagaacaagaaagtagaactgaagtttgtattgaagacatgatatatatattatttgaaggtgtttatt 8394495  T
Q  507 g 507  Q
    |    
T  8394494 g 8394494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 9 - 488
Target Start/End: Original strand, 8412455 - 8412934
Alignment:
Q  9 agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgaga 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8412455 agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgaga 8412554  T
Q  109 gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctaatacagcttccaaga 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8412555 gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaaga 8412654  T
Q  209 ctgcatagagttgaactgtagcattagaatttgtagaatgcttttgttgttgatcttgtaatatttgtgtgatgttgttgttttctaataatggagtatt 308  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8412655 ctgcatagagttgaactgtagcattagaaattgtagaatgcttttgttgttgatcttgtaatatttgtgtgatgttgttgttttctaataatggagtatt 8412754  T
Q  309 tttgtactgtttgattacttttagttcttgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagttttgggagatggattgaa 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8412755 tttgtactgtttgattacttttagttcttgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagttttgggagatggattgaa 8412854  T
Q  409 gcattgattactctatttgaagacgacgataaagaacaagaaagtagaactgaagtttgtatcgaagacatgatatatat 488  Q
    ||||| |||||| | |||||||| || |||||||||||||||| | |||||||||||||||   ||| ||||||||||||    
T  8412855 gcattaattactttctttgaagatgatgataaagaacaagaaattggaactgaagtttgtaataaagccatgatatatat 8412934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 9 - 488
Target Start/End: Original strand, 8434553 - 8435032
Alignment:
Q  9 agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgaga 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8434553 agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgaga 8434652  T
Q  109 gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctaatacagcttccaaga 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8434653 gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaaga 8434752  T
Q  209 ctgcatagagttgaactgtagcattagaatttgtagaatgcttttgttgttgatcttgtaatatttgtgtgatgttgttgttttctaataatggagtatt 308  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8434753 ctgcatagagttgaactgtagcattagaaattgtagaatgcttttgttgttgatcttgtaatatttgtgtgatgttgttgttttctaataatggagtatt 8434852  T
Q  309 tttgtactgtttgattacttttagttcttgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagttttgggagatggattgaa 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8434853 tttgtactgtttgattacttttagttcttgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagttttgggagatggattgaa 8434952  T
Q  409 gcattgattactctatttgaagacgacgataaagaacaagaaagtagaactgaagtttgtatcgaagacatgatatatat 488  Q
    ||||| |||||| | |||||||| || |||||||||||||||| | |||||||||||||||   ||| ||||||||||||    
T  8434953 gcattaattactttctttgaagatgatgataaagaacaagaaattggaactgaagtttgtaataaagccatgatatatat 8435032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 9 - 234
Target Start/End: Original strand, 8406335 - 8406560
Alignment:
Q  9 agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgaga 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8406335 agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgaga 8406434  T
Q  109 gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctaatacagcttccaaga 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8406435 gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaaga 8406534  T
Q  209 ctgcatagagttgaactgtagcatta 234  Q
    ||||||||||||||||||||||||||    
T  8406535 ctgcatagagttgaactgtagcatta 8406560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 9 - 234
Target Start/End: Complemental strand, 8395237 - 8395012
Alignment:
Q  9 agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgaga 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  8395237 agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaactccagacatggttgtagcagtgaga 8395138  T
Q  109 gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctaatacagcttccaaga 208  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8395137 gtaatcatttttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaaga 8395038  T
Q  209 ctgcatagagttgaactgtagcatta 234  Q
    ||||||||||||||||||||||||||    
T  8395037 ctgcatagagttgaactgtagcatta 8395012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 22 - 274
Target Start/End: Original strand, 8431496 - 8431743
Alignment:
Q  22 agagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatattta 121  Q
    |||||||| || ||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||||||| ||  ||||||||||||||||||| ||||    
T  8431496 agagcagaagatagtttcagagccaaaagtggtgcaacttccccacttgtgacagctgcaacaccagacatagtcttagcagtgagagtaatcatgttta 8431595  T
Q  122 ttgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctaatacagcttccaagactgcatagagttg 221  Q
    ||||||| || ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||| |||||||||| || ||||  ||||||||    
T  8431596 ttgagttcaaaagaagattattccagttgttac---gttcgccaatgttgtgatgcatttctattctgtctgatacagcttctaaaactg--tagagttg 8431690  T
Q  222 aactgtagcattagaatttgtagaatgcttttgttgttgatcttgtaatattt 274  Q
    || ||| || |||||||||||||||||||||||||||||||||||||||||||    
T  8431691 aattgtggctttagaatttgtagaatgcttttgttgttgatcttgtaatattt 8431743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 79 - 215
Target Start/End: Original strand, 8417746 - 8417882
Alignment:
Q  79 gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgca 178  Q
    |||| ||||||||||||||||||||||||||||||||| || || || || || |||||| | ||||| ||||||||| |||| | ||||||||||||||    
T  8417746 gcaagaccagacatggttgtagcagtgagagtaatcatgttgatggaattcaagagaagagtgttccaattgttacgtagttcacaaatgttgtgatgca 8417845  T
Q  179 tttctattctgtctaatacagcttccaagactgcata 215  Q
    |||| ||||||||  | ||| ||||||||||||||||    
T  8417846 tttcaattctgtcagaaacaacttccaagactgcata 8417882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 79 - 215
Target Start/End: Complemental strand, 8375475 - 8375339
Alignment:
Q  79 gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgca 178  Q
    |||||||||||||||||||||||||| ||||||||||| || || ||||| || |||||| | ||||| |||||||| |||||||||||||| |||||||    
T  8375475 gcaacaccagacatggttgtagcagtaagagtaatcatgttgatggagttcaagagaagagtgttccaattgttacgctgttcgccaatgttttgatgca 8375376  T
Q  179 tttctattctgtctaatacagcttccaagactgcata 215  Q
    |||| | ||| ||  | || |||||||||| ||||||    
T  8375375 tttcaactctatcagaaactgcttccaagattgcata 8375339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 327 - 469
Target Start/End: Original strand, 8431775 - 8431914
Alignment:
Q  327 ttttagttcttgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagttttgggagatggattgaagcattgattactctattt 426  Q
    ||||| |||||||||| ||||||||||||| ||||| ||  ||| |||||||||||||| ||||||||| ||||  |||| |||||| |||||||| |||    
T  8431775 ttttaattcttgatcaacaacttgttttctggtttgaatagttggcaatgaaatatttgggagttttggaagattaattgcagcattaattactctcttt 8431874  T
Q  427 gaagacgacgataaagaacaagaaagtagaactgaagtttgta 469  Q
    |||   || |||||||||||||||  |||||||||||||||||    
T  8431875 gaa---gatgataaagaacaagaagttagaactgaagtttgta 8431914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 327 - 469
Target Start/End: Original strand, 8406694 - 8406833
Alignment:
Q  327 ttttagttcttgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagttttgggagatggattgaagcattgattactctattt 426  Q
    ||||| |||||||||| ||||||||||||| ||||| ||  ||| |||||||||||||| ||||||||| ||||  |||| ||| || |||||||| |||    
T  8406694 ttttaattcttgatcaacaacttgttttctggtttgaatagttggcaatgaaatatttgggagttttggaagattaattgcagcgttaattactctcttt 8406793  T
Q  427 gaagacgacgataaagaacaagaaagtagaactgaagtttgta 469  Q
    |||   || |||||||||||||||  |||||||||||||||||    
T  8406794 gaa---gatgataaagaacaagaagttagaactgaagtttgta 8406833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 79 - 215
Target Start/End: Original strand, 8439628 - 8439764
Alignment:
Q  79 gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgca 178  Q
    |||||||||||||||||||||||||| ||||||||||| || || ||||| || |||||| | ||||| ||| |||| |||||||||||||| |||||||    
T  8439628 gcaacaccagacatggttgtagcagtaagagtaatcatgttgatggagttcaagagaagagtgttccaattgctacgctgttcgccaatgttttgatgca 8439727  T
Q  179 tttctattctgtctaatacagcttccaagactgcata 215  Q
    |||| | ||| ||  | || |||||||||| ||||||    
T  8439728 tttcaactctatcagaaactgcttccaagattgcata 8439764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 103 - 222
Target Start/End: Original strand, 8368812 - 8368931
Alignment:
Q  103 gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctaatacagctt 202  Q
    |||||||| ||||| || || ||||||||||||||  ||||||| || |  ||||||||||||||||| ||||||||||||||||||||  |||||| ||    
T  8368812 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt 8368911  T
Q  203 ccaagactgcatagagttga 222  Q
    | |  | |||||||||||||    
T  8368912 caagaattgcatagagttga 8368931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 8400598 - 8400479
Alignment:
Q  103 gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctaatacagctt 202  Q
    |||||||| ||||| || || ||||||||||||||  ||||||| || |  ||||||||||||||||| ||||||||||||||||||||  |||||| ||    
T  8400598 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt 8400499  T
Q  203 ccaagactgcatagagttga 222  Q
    | |  | |||||||||||||    
T  8400498 caagaattgcatagagttga 8400479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 8422175 - 8422056
Alignment:
Q  103 gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctaatacagctt 202  Q
    |||||||| ||||| || || ||||||||||||||  ||||||| || |  ||||||||||||||||| ||||||||||||||||||||  |||||| ||    
T  8422175 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt 8422076  T
Q  203 ccaagactgcatagagttga 222  Q
    | |  | |||||||||||||    
T  8422075 caagaattgcatagagttga 8422056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 220
Target Start/End: Original strand, 8404470 - 8404604
Alignment:
Q  86 cagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctat 185  Q
    ||||||| |||| ||| ||||| || ||||| || || |||||||||| |||  | ||||| |||| ||||||||  || | ||| | ||||||||| ||    
T  8404470 cagacattgttgaagctgtgagtgttatcatgttgatggagtttaataaaagcgtgttccaattgtcacgttgttgtcctaagtttttatgcatttcaat 8404569  T
Q  186 tctgtctaatacagcttccaagactgcatagagtt 220  Q
    ||||||| ||||||| ||| | | |||||||||||    
T  8404570 tctgtctgatacagcctccgaaattgcatagagtt 8404604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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