View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13260_high_7 (Length: 511)
Name: NF13260_high_7
Description: NF13260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13260_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 56 - 473
Target Start/End: Original strand, 27847885 - 27848301
Alignment:
| Q |
56 |
tctatcatgcacgttaaaatcatactatgttgcgctactatcggtacaaattcttcggtgttctatatcaacaagtttttatattttcatttcaattagt |
155 |
Q |
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| T |
27847885 |
tctatcatgcacgttaaaatcacactatgttgcgctactatcggtacaaattcttcggtgttctatatcaacaagtttttctattttcattttaattagt |
27847984 |
T |
|
| Q |
156 |
cttttaatagtatcattctatcttgtattaattatcacatctaatatgtgggacagcacgtcacaaaatgcgcatttgcactacttcatggcctagtttc |
255 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27847985 |
cttt-aatagtatcattctatcttgtattaattatccattctaatatgtgggacggcacgtcacaaaatgcgcatttgcactacttcatggcctagtttc |
27848083 |
T |
|
| Q |
256 |
attcctataaataccagtcttatgaattcttaaacctcagttgtgtaggatttcaacaattttacaaatggcaacttcgaaagttctcagtatcgttctc |
355 |
Q |
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| T |
27848084 |
attcctataaataccagtcttatgaattcttaaacctcagttgtgtaggatttcaacaattttacaaatggcaacttcgaaagttcttagtatcgttctc |
27848183 |
T |
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| Q |
356 |
tttgtgttgttgggcttaagcataagttctgctgccagaaaactcattgttggggatgtaggtggaggatatggatatgccggaccaggcgaaggaggtg |
455 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27848184 |
tttgtgttgttgggcttaagcataagttctgctgccagaaaactcattgttggggatgtaggtggaggatatggatatgccggaccaggcgaaggaggtg |
27848283 |
T |
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| Q |
456 |
atggatatggtgtttctc |
473 |
Q |
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| T |
27848284 |
atggatatggtgtttctc |
27848301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 400
Target Start/End: Original strand, 27857985 - 27858062
Alignment:
| Q |
323 |
atggcaacttcgaaagttctcagtatcgttctctttgtgttgttgggcttaagcataagttctgctgccagaaaactc |
400 |
Q |
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| T |
27857985 |
atggcaacttcgaaagttctaagcatttctctctttgtgttgttgggtttaagcatgtgttctgctactagaaaactc |
27858062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 400
Target Start/End: Original strand, 27871996 - 27872105
Alignment:
| Q |
291 |
ctcagttgtgtaggatttcaacaattttacaaatggcaacttcgaaagttctcagtatcgttctctttgtgttgttgggcttaagcataagttctgctgc |
390 |
Q |
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| T |
27871996 |
ctcagttgtgtaagattcaaacaaaatttcatatggcaacttcgaaagttctaagcattgctatctttgtgctgttgggtttaagcatgtgttctgctac |
27872095 |
T |
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| Q |
391 |
cagaaaactc |
400 |
Q |
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| T |
27872096 |
tagaaaactc |
27872105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 400
Target Start/End: Original strand, 27884265 - 27884342
Alignment:
| Q |
323 |
atggcaacttcgaaagttctcagtatcgttctctttgtgttgttgggcttaagcataagttctgctgccagaaaactc |
400 |
Q |
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| T |
27884265 |
atggcaacttcaaaagttctaagcattgctctctttgtgctgttgggtttaagcatgtgttctgctactagaaaactc |
27884342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 400
Target Start/End: Original strand, 27885545 - 27885622
Alignment:
| Q |
323 |
atggcaacttcgaaagttctcagtatcgttctctttgtgttgttgggcttaagcataagttctgctgccagaaaactc |
400 |
Q |
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| T |
27885545 |
atggcaacttcaaaagttctaagcattgctctctttgtgctgttgggtttaagcatgtgttctgctactagaaaactc |
27885622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 400
Target Start/End: Original strand, 27967458 - 27967535
Alignment:
| Q |
323 |
atggcaacttcgaaagttctcagtatcgttctctttgtgttgttgggcttaagcataagttctgctgccagaaaactc |
400 |
Q |
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| T |
27967458 |
atggcaacttcaaaagttctaagcattgctctctttgtgctgttgggtttaagcatgtgttctgctactagaaaactc |
27967535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 400
Target Start/End: Original strand, 27979521 - 27979598
Alignment:
| Q |
323 |
atggcaacttcgaaagttctcagtatcgttctctttgtgttgttgggcttaagcataagttctgctgccagaaaactc |
400 |
Q |
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| T |
27979521 |
atggcaacttcaaaagttctaagcattgctctctttgtgctgttgggtttaagcatgtgttctgctactagaaaactc |
27979598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 400
Target Start/End: Original strand, 28024444 - 28024521
Alignment:
| Q |
323 |
atggcaacttcgaaagttctcagtatcgttctctttgtgttgttgggcttaagcataagttctgctgccagaaaactc |
400 |
Q |
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| T |
28024444 |
atggcaacttcaaaagttctaagcattgctctctttgtgctgttgggtttaagcatgtgttctgctactagaaaactc |
28024521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 400
Target Start/End: Original strand, 28036790 - 28036867
Alignment:
| Q |
323 |
atggcaacttcgaaagttctcagtatcgttctctttgtgttgttgggcttaagcataagttctgctgccagaaaactc |
400 |
Q |
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||||||||||| |||||||| || || | |||||||||| ||||||| |||||||| |||||||| | ||||||||| |
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| T |
28036790 |
atggcaacttcaaaagttctaagcattgctctctttgtgctgttgggtttaagcatgtgttctgctactagaaaactc |
28036867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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