View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13260_high_8 (Length: 498)
Name: NF13260_high_8
Description: NF13260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13260_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Complemental strand, 44844826 - 44844348
Alignment:
| Q |
1 |
acaggtaaaaacttccttgagttcacaggcagcaacaagcatactgtagactgtgtcccatttattgttgtcatcaatcaacagatccatcttactagga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44844826 |
acaggtaaaaacttccttgagttcacaggcagcaacaagcatactgtagactgtgtcccatttattgttgtcatcaatcaacagatccatcttactagga |
44844727 |
T |
|
| Q |
101 |
acttgaagtacttgcttaagctccaaaaatctctcttcaaccgattttgatgatttcacatattgcacactttttcgaactttagcaatagtttcttgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44844726 |
acttgaagtacttgcttaagctccaaaaatctctcttcaaccaattttgatgatttcacatattgcacactttttcgaactttagcaatagtttcttgca |
44844627 |
T |
|
| Q |
201 |
ttgcccaaagagtatctaatgcaaggcaactgagcacacgagcataacaactctgtcttaataattgaccattgaggatcacagggttcttaagagagag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44844626 |
ttgcccaaagagtatctaatgcaaggcaactgagcacacgagcataacaactctgtcttaataattgaccattgaggatcacagggttcttaagagagag |
44844527 |
T |
|
| Q |
301 |
gagatccctcacatttcccatcaaagtctcattggaaaagagtttatcaaatagaacgcaaaacaggcgaccctttaaatgccaactctttaggcatgtc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44844526 |
gagatccctcacatttcccatcaaagtctcattggaaaagagtttatcaaatagaacgcaaaacaggcgaccctttaaatgccaactctttaggcatgtc |
44844427 |
T |
|
| Q |
401 |
actatagtttgattcaaggaaccatccaaatcaggatatggtacggcaaaaacattaagaatgggatgatggaagttcc |
479 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44844426 |
actatagtttgattcaaggaaccatccaaatcaggatatggtacggcaaaaacattaagaatgggatgatggaagttcc |
44844348 |
T |
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