View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13260_low_1 (Length: 723)

Name: NF13260_low_1
Description: NF13260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13260_low_1
NF13260_low_1
[»] chr3 (2 HSPs)
chr3 (1-341)||(3437025-3437365)
chr3 (567-615)||(53870553-53870601)
[»] chr2 (6 HSPs)
chr2 (422-566)||(26613120-26613265)
chr2 (567-704)||(2502423-2502560)
chr2 (321-396)||(26613288-26613372)
chr2 (567-615)||(41768743-41768791)
chr2 (564-607)||(5278332-5278375)
chr2 (567-634)||(37545676-37545743)
[»] chr4 (4 HSPs)
chr4 (587-679)||(1013942-1014034)
chr4 (566-621)||(45330564-45330619)
chr4 (567-637)||(47377576-47377646)
chr4 (567-616)||(1013324-1013373)
[»] chr1 (1 HSPs)
chr1 (582-648)||(14285549-14285615)
[»] chr6 (2 HSPs)
chr6 (567-637)||(24125972-24126042)
chr6 (597-634)||(2038626-2038663)
[»] chr7 (3 HSPs)
chr7 (567-634)||(27599211-27599278)
chr7 (566-621)||(27600089-27600144)
chr7 (565-615)||(5487382-5487432)
[»] chr5 (1 HSPs)
chr5 (568-615)||(6804833-6804880)


Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 3437025 - 3437365
Alignment:
Q  1 attttatgtattcaagaaacaaagatatcaacgttgaatgattttctttgtttttcgttgtgttgtagctcacctcatggttactctttcagaccctcgg 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3437025 attttatgtattcaagaaacaaagatatcaacgttgaatgtttttctttgtttttcgttgtgttgtagctcatctcatggttactctttcagaccctcgg 3437124  T
Q  101 ttggtgcttttggcggcgttctaattatgtgggataatgaggatgtcgagattggtttctcttattctttctatcatgttttagcggttggtggacggtt 200  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||    
T  3437125 ttggtgcttttggtggctttctaattatgtgggataatgaggatgtcgagattggtttctcttattctttttatcatgttttggcggttggtggacagtt 3437224  T
Q  201 tatacagtcaaatgaagattttttcctcttcaatgtatatgctccttgtgatgtggggtgtcaacatgtgttgtgggagagtttatcttccagattggcc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3437225 tatacagtcaaatgaagattttttcctcttcaatgtatatgctccttgtgatgtggggtgtcaacatgtgttgtgggagagtttatcttccagattggcc 3437324  T
Q  301 aattatgtgaggaggaatgtgtgtgtttgtggagattttaa 341  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3437325 aattatgtgaggaggaatgtgtgtgtttgtggagattttaa 3437365  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 567 - 615
Target Start/End: Complemental strand, 53870601 - 53870553
Alignment:
Q  567 ggtggcatttaacctgggacagtgaagttgtttcccaccatggaaaagt 615  Q
    ||||||||||||||||||||| |||| || ||||||||||| |||||||    
T  53870601 ggtggcatttaacctgggacaatgaaattttttcccaccatagaaaagt 53870553  T

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Target: chr2 (Bit Score: 102; Significance: 3e-50; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 422 - 566
Target Start/End: Complemental strand, 26613265 - 26613120
Alignment:
Q  422 ctaaaccatctactgcgatgg-aacatgtcaatcaatgcgtctcgttgatctcgagctctccaactgccgccatttcatcattttcccacacaaatgatg 520  Q
    |||||||||||| || || || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  26613265 ctaaaccatctattgtgaaggcaacatgtcaatcaatgcgtctcgttgatctcgagctctccaattgccgccatttcatcattttcccacacaaacgatg 26613166  T
Q  521 cacaattagccacgggggaacattcaaacgtgaatgattcccaaag 566  Q
    ||||| ||| ||  ||||||||||||||||||||||||||||||||    
T  26613165 cacaagtagtcagaggggaacattcaaacgtgaatgattcccaaag 26613120  T

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Target: chr2; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 567 - 704
Target Start/End: Complemental strand, 2502560 - 2502423
Alignment:
Q  567 ggtggcatttaacctgggacagtgaagttgtttcccaccatggaaaagttaaattaagccattagatttaatcaagaacacaaatttgttatggtatgtc 666  Q
    |||||| |||||||||||| ||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||| ||||| |||| | ||||    
T  2502560 ggtggcttttaacctgggatagtgaagttgttttccaccatggaaaagttagattaaaccattagatttaatcaagaacacagatttgctatgatctgtc 2502461  T
Q  667 tgtatcaaatttctctttacctcctatctccaccctca 704  Q
    |||||||||| |||||||||||||||||||||||||||    
T  2502460 tgtatcaaatctctctttacctcctatctccaccctca 2502423  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 321 - 396
Target Start/End: Complemental strand, 26613372 - 26613288
Alignment:
Q  321 gtgtgtttgtggagattttaactttgttcaatccgaagtgaaaagaaa---------caaatttttgaagttggatgacatgatt 396  Q
    ||||||||  |||||||||||||||||||||||||||| |||||||||         |||||||| |||||||||||||||||||    
T  26613372 gtgtgtttccggagattttaactttgttcaatccgaagagaaaagaaaagaaagaaacaaattttcgaagttggatgacatgatt 26613288  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 567 - 615
Target Start/End: Complemental strand, 41768791 - 41768743
Alignment:
Q  567 ggtggcatttaacctgggacagtgaagttgtttcccaccatggaaaagt 615  Q
    ||||||||||| | |||| |||||||||||||||||||||||| |||||    
T  41768791 ggtggcatttagcatgggtcagtgaagttgtttcccaccatgggaaagt 41768743  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 564 - 607
Target Start/End: Complemental strand, 5278375 - 5278332
Alignment:
Q  564 aagggtggcatttaacctgggacagtgaagttgtttcccaccat 607  Q
    |||||||||||||||||||||||| |||| || |||||||||||    
T  5278375 aagggtggcatttaacctgggacaatgaaattttttcccaccat 5278332  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 634
Target Start/End: Original strand, 37545676 - 37545743
Alignment:
Q  567 ggtggcatttaacctgggacagtgaagttgtttcccaccatggaaaagttaaattaagccattagatt 634  Q
    ||||||||||||  | ||| || |||||||||||||||||||| |||||||||||   ||||||||||    
T  37545676 ggtggcatttaaaataggaaagggaagttgtttcccaccatgggaaagttaaatttgaccattagatt 37545743  T

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Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 587 - 679
Target Start/End: Complemental strand, 1014034 - 1013942
Alignment:
Q  587 agtgaagttgtttcccaccatggaaaagttaaattaagccattagatttaatcaagaacacaaatttgttatggtatgtctgtatcaaatttc 679  Q
    ||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||  |||||| |||| ||||||||||||    
T  1014034 agtgaagttgtttcccaccatgggaaagttagattaaaccattagatttaatcaagaacacaaatttactatggtctgtcagtatcaaatttc 1013942  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 566 - 621
Target Start/End: Original strand, 45330564 - 45330619
Alignment:
Q  566 gggtggcatttaacctgggacagtgaagttgtttcccaccatggaaaagttaaatt 621  Q
    |||||| ||||||  ||||| || | ||||||||||||||||||||||||||||||    
T  45330564 gggtggaatttaaaatgggaaaggggagttgtttcccaccatggaaaagttaaatt 45330619  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 567 - 637
Target Start/End: Complemental strand, 47377646 - 47377576
Alignment:
Q  567 ggtggcatttaacctgggacagtgaagttgtttcccaccatggaaaagttaaattaagccattagatttaa 637  Q
    |||| |||||||  ||||| || | |||||||||||||||||| |||||||  || |||||||||||||||    
T  47377646 ggtgccatttaatttgggaaaggggagttgtttcccaccatgggaaagttattttcagccattagatttaa 47377576  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 567 - 616
Target Start/End: Original strand, 1013324 - 1013373
Alignment:
Q  567 ggtggcatttaacctgggacagtgaagttgtttcccaccatggaaaagtt 616  Q
    |||| |||||||||||||||||| ||||| ||||||||||| | ||||||    
T  1013324 ggtgacatttaacctgggacagtaaagttttttcccaccataggaaagtt 1013373  T

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Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 582 - 648
Target Start/End: Original strand, 14285549 - 14285615
Alignment:
Q  582 gggacagtgaagttgtttcccaccatggaaaagttaaattaagccattagatttaatcaagaacaca 648  Q
    |||||||||||||||||| ||||||||||||||||| ||||| ||| ||||| ||||||||||||||    
T  14285549 gggacagtgaagttgttttccaccatggaaaagttagattaaaccaatagatctaatcaagaacaca 14285615  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 567 - 637
Target Start/End: Original strand, 24125972 - 24126042
Alignment:
Q  567 ggtggcatttaacctgggacagtgaagttgtttcccaccatggaaaagttaaattaagccattagatttaa 637  Q
    ||||||||||||  ||||| || | |||||||||||||||||| |||||||  || |||||||||||||||    
T  24125972 ggtggcatttaatttgggaaaggggagttgtttcccaccatgggaaagttattttcagccattagatttaa 24126042  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 597 - 634
Target Start/End: Original strand, 2038626 - 2038663
Alignment:
Q  597 tttcccaccatggaaaagttaaattaagccattagatt 634  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  2038626 tttcccaccatgggaaagttaacttaagccattagatt 2038663  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 634
Target Start/End: Original strand, 27599211 - 27599278
Alignment:
Q  567 ggtggcatttaacctgggacagtgaagttgtttcccaccatggaaaagttaaattaagccattagatt 634  Q
    ||||||||||||  ||||| || | |||||||||||||||||| |||||||||||   ||||||||||    
T  27599211 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagttaaatttgaccattagatt 27599278  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 566 - 621
Target Start/End: Complemental strand, 27600144 - 27600089
Alignment:
Q  566 gggtggcatttaacctgggacagtgaagttgtttcccaccatggaaaagttaaatt 621  Q
    |||||||||||||  ||||| || | |||||||||||||||||| |||||||||||    
T  27600144 gggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagttaaatt 27600089  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 565 - 615
Target Start/End: Complemental strand, 5487432 - 5487382
Alignment:
Q  565 agggtggcatttaacctgggacagtgaagttgtttcccaccatggaaaagt 615  Q
    |||||||| |||||||||||| |  |||||| |||||||||||||||||||    
T  5487432 agggtggcgtttaacctgggaaatggaagttctttcccaccatggaaaagt 5487382  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 568 - 615
Target Start/End: Complemental strand, 6804880 - 6804833
Alignment:
Q  568 gtggcatttaacctgggacagtgaagttgtttcccaccatggaaaagt 615  Q
    |||||||||| | |||| |||||||||||||||||||||||| |||||    
T  6804880 gtggcatttagcatgggtcagtgaagttgtttcccaccatgggaaagt 6804833  T

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