View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13260_low_10 (Length: 440)
Name: NF13260_low_10
Description: NF13260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13260_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 13 - 421
Target Start/End: Original strand, 13305539 - 13305950
Alignment:
| Q |
13 |
cagaccagggtattcgctgaaacatgtaggttaaactagtttaacgtcagtttttgcaattattctgaatgaggattttaggacatcaaaatatttacca |
112 |
Q |
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| T |
13305539 |
cagaccagggtattcgctgaaacatgtaggttaaactagtttaacgtcagtttttgcaattattctgaatgaggattttaggtcatcaaaatatttacca |
13305638 |
T |
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| Q |
113 |
agcaatttaaagctgcatcgccgaagagcaaaactaaatttagtgtatgcatgttcactgtcatctacacaaggaagacaaaaattatcagactaaatct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
13305639 |
agcaatttaaagctgcatcgccgaagagcaaaactaaatttagtgtatgcatgttcactgtcatctacacaaggtagagaaaaattatcagactaaatct |
13305738 |
T |
|
| Q |
213 |
aaatcattaggacatgtaatag-agaaatgaggaggaaatatagaagagactgtc--agaaatcaaaatattataagttgttaataaatttaaaatctag |
309 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13305739 |
aaatcattaggacatgtaatagaagaaatgaggaggaaatatagaagagactgtcatagaaatcaaaatattataagttgttgataaatttaaaatctag |
13305838 |
T |
|
| Q |
310 |
aatacagagacagaaggtcatgttgggcaacacgtcgattattcctcaggtgatatgccaccgatatcaaatgttacgagtatactaatattgattattc |
409 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13305839 |
aatacatagacagaaggtcatgttgggcaacacgtcgaatattcctgaggtgatatgccaccgatatcaaatgttacgagtatactaatattgattattc |
13305938 |
T |
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| Q |
410 |
ttatgattcggg |
421 |
Q |
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| T |
13305939 |
ttatgattcggg |
13305950 |
T |
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