View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13260_low_12 (Length: 395)
Name: NF13260_low_12
Description: NF13260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13260_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 116 - 375
Target Start/End: Complemental strand, 38213135 - 38212872
Alignment:
| Q |
116 |
tttgttcactcctgacaattaagtataaatgatgttttattcacagcataatagtgctcggatcaaattaagnnnnnnntgaaactctagaagcaatatg |
215 |
Q |
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| T |
38213135 |
tttgttcactcttgacaattaagtataaatgatgttttattcacagcataatggtgctcggatcaaattaagaaaaaaatgaaactctagaagcaatatg |
38213036 |
T |
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| Q |
216 |
tattatatgaa----ataaaatattgaaattagctatgaagtaaataaaatacaaaaggaataattataagcatgcataatctataactaatttgagatg |
311 |
Q |
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| T |
38213035 |
tattatatgaagtaaataaaatattgaaattagttatgaagtaaataaaatacaaaaggaataattataagcatgcataatctataactaatttgagatg |
38212936 |
T |
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| Q |
312 |
caaattctgcatatttaaatcttnnnnnnncttcttgttgatcgtctataactagcggttctat |
375 |
Q |
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| T |
38212935 |
caaattctgcatatttaaatcttaaaaaaacttcttgttgatcgtctataactagcggttctat |
38212872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 38213206 - 38213125
Alignment:
| Q |
16 |
atggacagaggttgagatatttgccaaagctaaattcaccataaatagtaaataagaaattgcaattcaattttgttcactc |
97 |
Q |
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| T |
38213206 |
atggacagaggttgagatatttgccaaagctaaattcaccatacatagtaaataagaaattgcaattcaattttgttcactc |
38213125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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