View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13260_low_15 (Length: 367)
Name: NF13260_low_15
Description: NF13260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13260_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 8 - 353
Target Start/End: Original strand, 48749233 - 48749596
Alignment:
| Q |
8 |
cgaagaatataacagcaacaacagaaacatggagaatgaaaaagaaggtgaaaattcaaacaaagaatctgtgaaagtttatgaagagaaagttcttgtc |
107 |
Q |
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| T |
48749233 |
cgaagaaaataacagcaacaacagaaacatggagaatgaaaaagaaggtgaaaattcaaacaaagaatctgtgaaagtttatgaagagaaagttcttgtc |
48749332 |
T |
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| Q |
108 |
attatggctggtgatcagaacccaacgtttttagctacacctgtttttccaaaatcatcttctgttatgaatctagatgcgaatcactcggatgaacaac |
207 |
Q |
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| T |
48749333 |
attatggctggtgatcagaacccaacgtttttagctacacctgtttttccaaaatcatcttctgttatgaatctagatgcgaatcactcggatgaacaac |
48749432 |
T |
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| Q |
208 |
gcgaaaaccatgaaactgttgagaaatcagagaaagaagaaatggaaacagaagaacagagtgagtcagtaacataatttgtttt--------------- |
292 |
Q |
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| T |
48749433 |
gcgaaaaccatgaaactgttgagaaatcagagaaagaagaaatggaaacagaagaacagagtcagtcagtaacataatttgtttttattttcttaatttt |
48749532 |
T |
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| Q |
293 |
---tattttcttccatgattcgggaagtgtaaatttaagatgagataaatttgttataatctga |
353 |
Q |
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| T |
48749533 |
atctattttcttccatgattcgggaagtgtaaatttaagatgagataaatttgttataatctga |
48749596 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 84 - 151
Target Start/End: Complemental strand, 3425762 - 3425695
Alignment:
| Q |
84 |
gtttatgaagagaaagttcttgtcattatggctggtgatcagaacccaacgtttttagctacacctgt |
151 |
Q |
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| T |
3425762 |
gtttatgaagagaatatccttgtcattatggctggtaatgagaacccaacattcttggctacccctgt |
3425695 |
T |
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