View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13260_low_16 (Length: 364)

Name: NF13260_low_16
Description: NF13260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13260_low_16
NF13260_low_16
[»] chr5 (10 HSPs)
chr5 (9-364)||(1042730-1043091)
chr5 (184-364)||(1049006-1049185)
chr5 (199-251)||(1045504-1045556)
chr5 (194-251)||(1069950-1070007)
chr5 (9-93)||(1048512-1048595)
chr5 (197-251)||(1064671-1064725)
chr5 (199-252)||(1032485-1032538)
chr5 (199-252)||(1051808-1051861)
chr5 (199-251)||(1644400-1644452)
chr5 (197-251)||(1057609-1057663)


Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 364
Target Start/End: Original strand, 1042730 - 1043091
Alignment:
Q  9 agcacagacgtggggatttgacttttcacacctttctttatcaataagacaaaaaagtatttccacttctagaacataccatatagtataaatatccata 108  Q
    |||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1042730 agcacaaacgttgggatttgacttttcacaccttactttatcaataagacaaaaaagtatttccacttctagaacataccatatagtataaatatccata 1042829  T
Q  109 caccaaaccaacccccttcatattgaatcacatatttttcatcaaaagnnnnnnnnnnnnnnnntggaagctgccaacatcactaattcaattcctcttc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||||||    
T  1042830 caccaaaccaacccccttcatattgaatcacatatttttcatcaaaag--------aaaaaaaatggaagctgccaacatcactaattcaattcctcttc 1042921  T
Q  209 ttacaccttacaagatgggcaaattcaatctagctcataggtacatagt------------atttctcttgctattataattcatttcaatgttttt--- 293  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |            |||||  ||  |||| || ||||||||||| |||||       
T  1042922 ttacaccttacaagatgggtaaattcaatctagctcataggtacatactacatagtataccatttcattttgtattctatttcatttcaatttttttttg 1043021  T
Q  294 ctcttagctaaataatttcacataatttcagagttgttttggcaccgctaacaagaatgagatcatacaac 364  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1043022 ctctt-gctaaataatttcacataatttcagagttgttttggcaccactaacaagaatgagatcatacaac 1043091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 184 - 364
Target Start/End: Original strand, 1049006 - 1049185
Alignment:
Q  184 aacatcactaattcaattcctcttcttacaccttacaagatgggcaaattcaatctagctcataggtacatagtatttctcttgctattataattcattt 283  Q
    ||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1049006 aacatcactgatccaattcctcttcttacacattacaagatgggcaaattcaatctagctcataggtacatagtatttctcttgctattagaattcattt 1049105  T
Q  284 caatgtttttctcttagctaaataatttcacataatttcagagttgttttggcaccgctaacaagaatgagatcatacaac 364  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1049106 caatgtttttctctt-gctaaataatttcacataatttcagagttgttttggcaccgctaacaagaatgagatcatacaac 1049185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 1045504 - 1045556
Alignment:
Q  199 attcctcttcttacaccttacaagatgggcaaattcaatctagctcataggta 251  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  1045504 attcctcttcttactccttacaagatgggcaaattcaatctatctcataggta 1045556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 1069950 - 1070007
Alignment:
Q  194 attcaattcctcttcttacaccttacaagatgggcaaattcaatctagctcataggta 251  Q
    ||||||||||||||||||| |||||||| ||||| |||||||||||| ||||||||||    
T  1069950 attcaattcctcttcttactccttacaaaatgggtaaattcaatctatctcataggta 1070007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 1048512 - 1048595
Alignment:
Q  9 agcacagacgtggggatttgacttttcacacctttctttatcaataagacaaaaaagtatttccacttctagaacataccatata 93  Q
    |||||| |||||| |||||||||||||||| ||| ||| |||||||||||||||||| || ||||||||  ||||||| ||||||    
T  1048512 agcacaaacgtggagatttgacttttcacaacttactt-atcaataagacaaaaaagaatatccacttccggaacatatcatata 1048595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 1064671 - 1064725
Alignment:
Q  197 caattcctcttcttacaccttacaagatgggcaaattcaatctagctcataggta 251  Q
    |||||||||||||||| |||||||| ||| | |||||||||||||||||||||||    
T  1064671 caattcctcttcttactccttacaaaatgagaaaattcaatctagctcataggta 1064725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 1032485 - 1032538
Alignment:
Q  199 attcctcttcttacaccttacaagatgggcaaattcaatctagctcataggtac 252  Q
    |||||||||||||||||||||||||||||||| |||| |||  |||||||||||    
T  1032485 attcctcttcttacaccttacaagatgggcaatttcagtctctctcataggtac 1032538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 1051808 - 1051861
Alignment:
Q  199 attcctcttcttacaccttacaagatgggcaaattcaatctagctcataggtac 252  Q
    |||||||||||||||||||||||||||||||| |||| |||  |||||||||||    
T  1051808 attcctcttcttacaccttacaagatgggcaatttcagtctctctcataggtac 1051861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 1644452 - 1644400
Alignment:
Q  199 attcctcttcttacaccttacaagatgggcaaattcaatctagctcataggta 251  Q
    |||||||||||||| |||||||||||||| ||||| |||||| ||||||||||    
T  1644452 attcctcttcttactccttacaagatgggaaaatttaatctatctcataggta 1644400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 1057609 - 1057663
Alignment:
Q  197 caattcctcttcttacaccttacaagatgggcaaattcaatctagctcataggta 251  Q
    ||||||| ||||| || |||||||| ||||| |||||||||||| ||||||||||    
T  1057609 caattccacttctcactccttacaaaatgggaaaattcaatctatctcataggta 1057663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University