View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13260_low_18 (Length: 355)
Name: NF13260_low_18
Description: NF13260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13260_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 14 - 339
Target Start/End: Complemental strand, 33566972 - 33566657
Alignment:
| Q |
14 |
agggacaaaagaaaacgattcaattaccatagatttgacatgattgttcaggcttacagtttggaaaatccaggcaaagtaagaaaaatatctacatgtt |
113 |
Q |
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| T |
33566972 |
agggacaaaagaaaacgattcaattaccatagatttgacatgattgttcaggcttacagtttggaaaatccaggcaaagtaagaaaaatatctacatgtt |
33566873 |
T |
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| Q |
114 |
ggttagaataagagaacgtgaatttctacgaatttctacctaaattacactcgttactgttacctaaccctatgnnnnnnnnntcaatttctgctggtca |
213 |
Q |
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| T |
33566872 |
ggttagaataagagaacgtgaatttctac----------ctaaattacactcgttactgttacctaaccctatgaaaaataaatcaatttctgctggtca |
33566783 |
T |
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| Q |
214 |
gtacattcttaatcatactcaactcactaccaattaaaaagccaaaatccatttccacttcctgcctctgtggaatctgattcactctccattgtctcgt |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
33566782 |
gtacattcttaatcatactcaactcactaccaattaaaaagccaaaatccatttccacttcctgcctctgtggaatcagattcactctccattgtctcat |
33566683 |
T |
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| Q |
314 |
ccgaactctcgctcggaaggagtttt |
339 |
Q |
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| T |
33566682 |
ccgaactctcgctcggaagcagtttt |
33566657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 46 - 137
Target Start/End: Complemental strand, 32407202 - 32407111
Alignment:
| Q |
46 |
atttgacatgattgttcaggcttacagtttggaaaatccaggcaaagtaagaaaaatatctacatgttggttagaataagagaacgtgaatt |
137 |
Q |
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| T |
32407202 |
atttgacatgattattgaggcttgcagtttggaaaattcaggcaacgtaataaaaccatctacatgttggttagaataagagaacgtaaatt |
32407111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 32407056 - 32406986
Alignment:
| Q |
197 |
tcaatttctgctggtcagtacattcttaatcatactcaactcactaccaattaaaaagccaaaatccatttcc |
269 |
Q |
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||||||||| ||||| |||||||| ||| ||||||||||||| || ||| |||||||| |||||||||||| |
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| T |
32407056 |
tcaatttcttctggtgagtacatttttattcatactcaactctct--caactaaaaagctgaaatccatttcc |
32406986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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