View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13260_low_19 (Length: 355)
Name: NF13260_low_19
Description: NF13260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13260_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 28938465 - 28938782
Alignment:
| Q |
1 |
tataagacggtggattgtcatggcagtatcaaatgcataaatataaaccacaagaacatattaaagtaaatgtatttgaatggcccgtataataaaggca |
100 |
Q |
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| T |
28938465 |
tataagacggtggattgtcatggcagtatgaaatgcataaatatataccacaagaacaaattaaagtaaatgtatttgaatggccc--ataataaaggca |
28938562 |
T |
|
| Q |
101 |
aaaataaagattaaagcacttaccacaacaccaataatcgtcattcttcaaaaaggaatcatcttggccaacacaattagcatgataggttttaaggcaa |
200 |
Q |
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| T |
28938563 |
aaaataaacattaaagcacttaccacaacaccaataatcgtcattcttcagaaaggaatcatcttggccaacacaattagcatgataggttttaaggcaa |
28938662 |
T |
|
| Q |
201 |
ttcctttaatcaaccataaaaaagagtcacaagcatgaaaatgagcgagcataaccaaaaccacaaacagagaaaaatgtggtaaaatattgaaattgat |
300 |
Q |
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| T |
28938663 |
ttcctttaatcaaccataaaaaagagtcacaagcatgaaaatgagcgagcataaccaaaaccacaaacagagaaaaatgtggtaaaatagtgaaattgat |
28938762 |
T |
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| Q |
301 |
tattattttagaaaataaga |
320 |
Q |
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| T |
28938763 |
tattattttagaaaataaga |
28938782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 62 - 225
Target Start/End: Original strand, 28903924 - 28904086
Alignment:
| Q |
62 |
taaagtaaatgtatttgaatggcccgtataataaaggcaaaaataaagattaaagca-cttaccacaacaccaataatcgtcattcttcaaaaaggaatc |
160 |
Q |
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| T |
28903924 |
taaaggaaatgtaattgaatgccc--tataataaaggcaaaaataaacggtgaagcagcttaccacaacaccacctatcgtcattcttcaaaaaggaagc |
28904021 |
T |
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| Q |
161 |
atcttggccaacacaattagcatgataggttttaaggcaattcctttaatcaaccataaaaaaga |
225 |
Q |
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| T |
28904022 |
atcttgttttacacattcagcatgataggttttaaggcaatccctgtaatcaaccataaaaaaga |
28904086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 93 - 225
Target Start/End: Original strand, 28927050 - 28927183
Alignment:
| Q |
93 |
taaaggcaaaaataaagattaaagca-cttaccacaacaccaataatcgtcattcttcaaaaaggaatcatcttggccaacacaattagcatgataggtt |
191 |
Q |
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|||||||||||||||| | ||||| ||||||||||||||||| || |||||||| || ||||||| |||| || || | || ||||||||||||||| |
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| T |
28927050 |
taaaggcaaaaataaaagatgaagcagcttaccacaacaccaattattgtcattctccataaaggaagcatcatgacccaggcatttagcatgataggtt |
28927149 |
T |
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| Q |
192 |
ttaaggcaattcctttaatcaaccataaaaaaga |
225 |
Q |
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| T |
28927150 |
ttaaggcaatccctttaatcaaccataaaaaaga |
28927183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 118 - 225
Target Start/End: Original strand, 28894012 - 28894119
Alignment:
| Q |
118 |
acttaccacaacaccaataatcgtcattcttcaaaaaggaatcatcttggccaacacaattagcatgataggttttaaggcaattcctttaatcaaccat |
217 |
Q |
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|||||||||||||||||| ||| ||||| |||||||||||||||||| || | || | ||||||||||||||||||||||||||| ||||||||||| |
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| T |
28894012 |
acttaccacaacaccaattatcatcatttgtcaaaaaggaatcatctttccccaggcattcagcatgataggttttaaggcaattcctgtaatcaaccat |
28894111 |
T |
|
| Q |
218 |
aaaaaaga |
225 |
Q |
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|||||||| |
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|
| T |
28894112 |
aaaaaaga |
28894119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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