View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13260_low_2 (Length: 695)
Name: NF13260_low_2
Description: NF13260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13260_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 298 - 681
Target Start/End: Original strand, 48892046 - 48892429
Alignment:
| Q |
298 |
ctcacgctaataaggactgagcaaaagaatctagtattttttcatgattttcttcattcttcaatagctgcaagtactcttcatacatcttctcaagaaa |
397 |
Q |
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| T |
48892046 |
ctcacgctaataaggactgagcaaaagaatctagtattttttcatgattttcttcattcttcaatagctgcaagtactcttcatacatcttctcaagaaa |
48892145 |
T |
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| Q |
398 |
accagattggcattcaatgtcatcattgttgaccaagtctgcatggtactgttcctcaaacaacaatccaaacccatcactgtctctctcttttgtttct |
497 |
Q |
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| T |
48892146 |
accagattggcattcaatgtcatcattgttgaccaagtctgcatggtactgttcctcaaacaacaatccaaacccatcactgtctctctcttttgtttct |
48892245 |
T |
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| Q |
498 |
gttctttgctcttcctcttggcttgttgttactgagttgtattccaaattcaaggttatatcagttcttggtattattgatgataaagtcttcttgaccc |
597 |
Q |
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| T |
48892246 |
gttctttgctcttcctcttggcttgttgttactgatttgtattccaaattcaaggttatatcagttcttggtattattgatgataaagtcttcttgaccc |
48892345 |
T |
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| Q |
598 |
ttataggctttggtagataaactaaggtcttcttctctgaatcttcttgtactttggttatgactttgtttttgtcatttttct |
681 |
Q |
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| T |
48892346 |
ttataggctttggtagataaactaaggtcttcttctctgaatcttctggtactttggttatgactttgtttttgtcatttttct |
48892429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 15 - 204
Target Start/End: Original strand, 48891766 - 48891956
Alignment:
| Q |
15 |
gaggtagtataattattttcctaaaaaattttaattgtagaaaatttccgtttattgttgtgtgcgtatcttcnnnnnnnnnnnnngg-tagaaattgtt |
113 |
Q |
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| T |
48891766 |
gaggtagtattattattttccaaaaaaaatttaattgtagaaaatttccgtttattgttgtgtacgtatcttcttgttttttttttgggtagaaattgtt |
48891865 |
T |
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| Q |
114 |
gtatatctaatgatgaatgaacagggagactggatgataattaagtgataacgtgaaaagctaattaaacttcaaacatttctcagttaat |
204 |
Q |
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| T |
48891866 |
gtatatctaatgatgaatgaacagggagactggatggtaattaagtgataaagtgaaaagctaattaaacttcaaacatttctgagttaat |
48891956 |
T |
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