View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13260_low_22 (Length: 320)
Name: NF13260_low_22
Description: NF13260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13260_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 303
Target Start/End: Complemental strand, 39752456 - 39752179
Alignment:
| Q |
16 |
ataattcctagctaat---aaaggtggttcaacaatgacactcaccacatatctagtcgttaggatgaacaccaagaacgagcctcctaggataaagtta |
112 |
Q |
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| T |
39752456 |
ataattcctagctaattataaaggtggttcagcaatcacactcaccacaaatctagtcgttaggatgaacaccaagaacgagcctcctaggataaaatta |
39752357 |
T |
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| Q |
113 |
tgagggttccactgcacgtaattcaatttatgctattaatattttatttaatcaaactacatttatcgtagttcttgcaaatttttaactaattgtattt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | || | |
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| T |
39752356 |
tgagggttccactgcacgtaattcaatttatgctattaata-tttatttaatcaaactacatttatcttagttcttgcaaatttttaactaa-agaatgt |
39752259 |
T |
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| Q |
213 |
cttgtgcaatcattacaaaaacgaaagaatgtgttgtttgcaaataaaggaaaattagatgcatgcaggttcatatgaaataaactagatg |
303 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39752258 |
-----------attgcaaaaacgaaagaatgtgttgtttgcaaataaaggaaaattagatgcatgcaggttcatatgaaataaactagatg |
39752179 |
T |
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