View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13260_low_26 (Length: 285)
Name: NF13260_low_26
Description: NF13260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13260_low_26 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 35139 - 34861
Alignment:
| Q |
1 |
aatcaatttgaaggataaccgctcctcctcctcccccttggctagatggatctaagaaatagtcgacagcacgcatgcattgtttctctgcaaatgcatc |
100 |
Q |
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| T |
35139 |
aatcaatttgaaggataaccgctcctcctcctcccccttggctagatggatctaagaaatagtcgacagcacgcatgcattgtttctctgcaaatgcatc |
35040 |
T |
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| Q |
101 |
caatccaatcaaatctacctttaattgtttatgtgattgggatcaaaacaaagatttcttcttttctttttagacaagattattaattagaagnnnnnnn |
200 |
Q |
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| T |
35039 |
c-----aatcaaatctacctttaattgtttatgtgattgggatcaaaacaaagatttcttcttttctttttagacaagattattaattagaa-aaaaaaa |
34946 |
T |
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| Q |
201 |
ncctgagtaaaggagatgaacaacatttatgcctcttcatctcaccacacttctcttcgctnnnnnnngcatattcgctattcct |
285 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
34945 |
acccgagtaaaggagatgaacaacatttatgcctcttcatctcaccacacttctcttctctcccccccgcatattcgctattcct |
34861 |
T |
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