View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13260_low_27 (Length: 266)
Name: NF13260_low_27
Description: NF13260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13260_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 665325 - 665418
Alignment:
| Q |
16 |
atattttccttgtgggaacaagatggatattcctccagaagctacgcaaatgttgaatcagattgaagaaaagaaagcattactactgaagatt |
109 |
Q |
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| T |
665325 |
atattttccttgtgggaacaagatggatattcctccagaagctacgcaaatgttgaatcagattgaaaaaaagaaagcattactactgaagatt |
665418 |
T |
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Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 175 - 262
Target Start/End: Original strand, 665484 - 665571
Alignment:
| Q |
175 |
gttgagatataaaaaacatatagatacaacaatgaagtcttttgccgaggcattgaaacaaaatccagagattgggacacctatgcta |
262 |
Q |
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| T |
665484 |
gttgagatataaaaaacatatagatacaacaatgaagtcttttgccgaggcattgaaacaaaatccagagattgggacacctatgcta |
665571 |
T |
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