View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13260_low_28 (Length: 262)

Name: NF13260_low_28
Description: NF13260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13260_low_28
NF13260_low_28
[»] chr7 (16 HSPs)
chr7 (75-215)||(35109691-35109831)
chr7 (75-215)||(38265229-38265369)
chr7 (75-215)||(41151172-41151313)
chr7 (75-214)||(21577091-21577230)
chr7 (75-204)||(16059356-16059485)
chr7 (75-208)||(34721834-34721967)
chr7 (75-215)||(12472121-12472261)
chr7 (93-208)||(37095209-37095324)
chr7 (75-214)||(38405147-38405286)
chr7 (88-214)||(245257-245383)
chr7 (75-215)||(45278452-45278592)
chr7 (75-204)||(18116947-18117076)
chr7 (77-202)||(11216771-11216896)
chr7 (75-204)||(48176399-48176529)
chr7 (76-208)||(23028684-23028816)
chr7 (107-208)||(28407540-28407637)
[»] chr2 (25 HSPs)
chr2 (75-214)||(45136963-45137102)
chr2 (77-214)||(17136389-17136526)
chr2 (75-214)||(40156040-40156179)
chr2 (75-214)||(25987654-25987794)
chr2 (76-215)||(21637898-21638037)
chr2 (76-214)||(10745225-10745363)
chr2 (75-215)||(6672780-6672925)
chr2 (75-214)||(2754044-2754183)
chr2 (75-208)||(36836328-36836461)
chr2 (75-215)||(5039420-5039560)
chr2 (76-214)||(36380125-36380263)
chr2 (75-208)||(44650393-44650526)
chr2 (76-214)||(26690155-26690293)
chr2 (78-213)||(3200884-3201019)
chr2 (97-214)||(558432-558549)
chr2 (75-214)||(2357069-2357207)
chr2 (75-214)||(7860139-7860278)
chr2 (76-205)||(30372682-30372811)
chr2 (77-208)||(33066592-33066723)
chr2 (76-207)||(13047156-13047282)
chr2 (108-190)||(21487181-21487263)
chr2 (100-204)||(4553561-4553666)
chr2 (158-208)||(2098825-2098875)
chr2 (90-145)||(20961496-20961551)
chr2 (113-153)||(30477240-30477280)
[»] chr3 (25 HSPs)
chr3 (75-208)||(8400855-8400988)
chr3 (75-208)||(7417798-7417931)
chr3 (75-214)||(50823698-50823837)
chr3 (75-214)||(50852023-50852162)
chr3 (75-208)||(35198765-35198898)
chr3 (76-208)||(22855888-22856020)
chr3 (75-215)||(43334046-43334186)
chr3 (86-208)||(52545332-52545454)
chr3 (75-204)||(34824556-34824685)
chr3 (76-204)||(55468000-55468129)
chr3 (90-215)||(29635883-29636009)
chr3 (104-207)||(22371729-22371832)
chr3 (122-208)||(37330606-37330692)
chr3 (97-214)||(19872476-19872593)
chr3 (122-207)||(30534902-30534987)
chr3 (76-171)||(48077977-48078072)
chr3 (122-208)||(37454743-37454829)
chr3 (135-215)||(25910658-25910738)
chr3 (75-215)||(50725989-50726129)
chr3 (75-215)||(50786719-50786859)
chr3 (89-215)||(42876229-42876355)
chr3 (114-209)||(30203652-30203744)
chr3 (107-208)||(25589253-25589347)
chr3 (164-215)||(773666-773717)
chr3 (132-215)||(39438821-39438903)
[»] chr8 (21 HSPs)
chr8 (75-215)||(19723311-19723451)
chr8 (76-215)||(11404002-11404141)
chr8 (75-214)||(4840140-4840279)
chr8 (77-215)||(29767190-29767326)
chr8 (77-208)||(32296638-32296769)
chr8 (93-204)||(17095568-17095679)
chr8 (75-214)||(22711509-22711648)
chr8 (78-214)||(28739554-28739690)
chr8 (108-214)||(36261679-36261785)
chr8 (76-215)||(41553286-41553425)
chr8 (104-187)||(21355004-21355087)
chr8 (75-213)||(11610280-11610418)
chr8 (121-215)||(11909415-11909509)
chr8 (78-208)||(30682842-30682971)
chr8 (108-209)||(43288105-43288206)
chr8 (90-174)||(24475029-24475113)
chr8 (77-151)||(27881044-27881118)
chr8 (77-151)||(28021225-28021299)
chr8 (147-214)||(27879553-27879620)
chr8 (147-214)||(28019734-28019801)
chr8 (87-214)||(44741914-44742038)
[»] chr5 (10 HSPs)
chr5 (75-215)||(17064323-17064463)
chr5 (78-209)||(20983001-20983132)
chr5 (75-208)||(37976546-37976683)
chr5 (116-208)||(41910865-41910957)
chr5 (108-202)||(31673863-31673956)
chr5 (92-208)||(5009416-5009531)
chr5 (164-214)||(35237052-35237102)
chr5 (85-187)||(39162875-39162977)
chr5 (76-127)||(35237103-35237154)
chr5 (108-165)||(18303352-18303409)
[»] chr1 (17 HSPs)
chr1 (75-204)||(30054445-30054574)
chr1 (75-214)||(20014458-20014597)
chr1 (76-215)||(30370052-30370191)
chr1 (75-215)||(45324006-45324146)
chr1 (76-215)||(12025182-12025321)
chr1 (76-204)||(21090116-21090244)
chr1 (93-214)||(22024121-22024242)
chr1 (75-213)||(4573379-4573517)
chr1 (75-206)||(30850841-30850972)
chr1 (104-214)||(14498072-14498182)
chr1 (88-215)||(33763246-33763373)
chr1 (101-215)||(33762532-33762646)
chr1 (119-215)||(35371732-35371833)
chr1 (87-195)||(44438562-44438670)
chr1 (134-215)||(35618034-35618115)
chr1 (147-215)||(17015192-17015260)
chr1 (75-121)||(15034455-15034501)
[»] chr4 (26 HSPs)
chr4 (75-215)||(46494390-46494530)
chr4 (75-214)||(51066493-51066632)
chr4 (76-207)||(36192542-36192673)
chr4 (75-214)||(51713958-51714097)
chr4 (75-214)||(32139164-32139303)
chr4 (75-208)||(7173584-7173717)
chr4 (75-208)||(30970383-30970516)
chr4 (75-214)||(50905748-50905887)
chr4 (75-177)||(8740448-8740550)
chr4 (75-208)||(39863777-39863910)
chr4 (104-214)||(29576444-29576554)
chr4 (103-215)||(55231715-55231827)
chr4 (75-214)||(47626986-47627127)
chr4 (90-215)||(2570216-2570341)
chr4 (113-214)||(676766-676867)
chr4 (131-208)||(22304090-22304167)
chr4 (101-214)||(41523423-41523536)
chr4 (76-204)||(2294719-2294841)
chr4 (108-215)||(4080544-4080651)
chr4 (86-215)||(50399634-50399763)
chr4 (86-205)||(51279035-51279154)
chr4 (77-178)||(22423378-22423479)
chr4 (142-213)||(23084459-23084530)
chr4 (139-189)||(37990613-37990663)
chr4 (110-209)||(40012548-40012646)
chr4 (161-204)||(51066240-51066283)
[»] chr6 (9 HSPs)
chr6 (75-214)||(35163743-35163882)
chr6 (96-215)||(20685346-20685465)
chr6 (77-214)||(19686820-19686957)
chr6 (75-214)||(2711733-2711866)
chr6 (97-209)||(17948702-17948814)
chr6 (75-213)||(14505519-14505655)
chr6 (102-197)||(15070152-15070247)
chr6 (75-129)||(14496352-14496406)
chr6 (100-178)||(24336640-24336718)
[»] scaffold0021 (1 HSPs)
scaffold0021 (76-208)||(107691-107822)
[»] scaffold0691 (1 HSPs)
scaffold0691 (77-182)||(6994-7099)


Alignment Details
Target: chr7 (Bit Score: 129; Significance: 7e-67; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 75 - 215
Target Start/End: Original strand, 35109691 - 35109831
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35109691 ccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 35109790  T
Q  175 ggactggggcaccatcacctcactctaaaatttttgtaacc 215  Q
    |||||||||||||||| |||||| |||||||||||||||||    
T  35109791 ggactggggcaccatcccctcaccctaaaatttttgtaacc 35109831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 75 - 215
Target Start/End: Complemental strand, 38265369 - 38265229
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38265369 ccgagagaacctgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 38265270  T
Q  175 ggactggggcaccatcacctcactctaaaatttttgtaacc 215  Q
    |||||||||||||||| |||||| ||||||||| |||||||    
T  38265269 ggactggggcaccatcccctcaccctaaaatttatgtaacc 38265229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 75 - 215
Target Start/End: Original strand, 41151172 - 41151313
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattaccttt-gtaagtgctctttgagcccgaaggtcttccctgcct 173  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41151172 ccgagagaacccgggttcgagccccgctagtgtctttggagggaggtaaatgtaattaccttttgtaagtgctctttgagcccgaaggtcttccctgcct 41151271  T
Q  174 tggactggggcaccatcacctcactctaaaatttttgtaacc 215  Q
    ||||||||||||||||| |||||| ||||| |||||||||||    
T  41151272 tggactggggcaccatcccctcaccctaaattttttgtaacc 41151313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 75 - 214
Target Start/End: Complemental strand, 21577230 - 21577091
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  21577230 ccgagagaacccgggttcgagccccactaatgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagtccgaaggtcttccctgcctt 21577131  T
Q  175 ggactggggcaccatcacctcactctaaaatttttgtaac 214  Q
    |||||||||||||||| |||||| ||||||||||||||||    
T  21577130 ggactggggcaccatcccctcaccctaaaatttttgtaac 21577091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 75 - 204
Target Start/End: Complemental strand, 16059485 - 16059356
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  16059485 ccgagagaacccgggttcgagccccgctagtgcctttgcagggaggtaaatgtaattacctttgtaagtgctctctgagcccgaaggtcttccctacctt 16059386  T
Q  175 ggactggggcaccatcacctcactctaaaa 204  Q
    |||||||||||||||| |||||| ||||||    
T  16059385 ggactggggcaccatcccctcaccctaaaa 16059356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 34721834 - 34721967
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34721834 ccgagagaacccggattcaagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggacttccctgcctt 34721933  T
Q  175 ggactggggcaccatcacctcactctaaaatttt 208  Q
    ||||| |||||||||| |||||| ||||||||||    
T  34721934 ggactcgggcaccatcccctcaccctaaaatttt 34721967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 75 - 215
Target Start/End: Original strand, 12472121 - 12472261
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||    
T  12472121 ccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatataattacctttgtaagtgctctttgagcacgaaggtcttccctgtctt 12472220  T
Q  175 ggactggggcaccatcacctcactctaaaatttttgtaacc 215  Q
    ||||||||| |||||| |||||| ||||| ||| |||||||    
T  12472221 ggactggggtaccatcccctcaccctaaactttgtgtaacc 12472261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 93 - 208
Target Start/End: Complemental strand, 37095324 - 37095209
Alignment:
Q  93 gagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcac 192  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  37095324 gagccccgctagtgtctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatccc 37095225  T
Q  193 ctcactctaaaatttt 208  Q
    ||||| ||||||||||    
T  37095224 ctcaccctaaaatttt 37095209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 75 - 214
Target Start/End: Complemental strand, 38405286 - 38405147
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||||  || ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  38405286 ccgagagaattcgagttcgagcctcgctagtgcctttggagggaggtaaatgtaattatctttgtaagtgctctttgaacccgaaggtcttccctgcctt 38405187  T
Q  175 ggactggggcaccatcacctcactctaaaatttttgtaac 214  Q
    |||||||||||||||| |||||| |||||| |||||||||    
T  38405186 ggactggggcaccatcccctcaccctaaaaattttgtaac 38405147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 88 - 214
Target Start/End: Complemental strand, 245383 - 245257
Alignment:
Q  88 ggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcacc 187  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  245383 ggttcgagccccgctagtgcccttggagggaggtaaatgtaattatctttgtaaacgctctttgagcccgaaggtcttccctgccttggactggggcacc 245284  T
Q  188 atcacctcactctaaaatttttgtaac 214  Q
    ||| |||||| ||||||||||||||||    
T  245283 atcccctcaccctaaaatttttgtaac 245257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 75 - 215
Target Start/End: Original strand, 45278452 - 45278592
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||| | |||||| ||||||||||||||    
T  45278452 ccgagataacccgggttcgagccccgctagtgcctttgaagggaagtaaatgtaattatctttgtaagtgctctttaaacccgaatgtcttccctgcctt 45278551  T
Q  175 ggactggggcaccatcacctcactctaaaatttttgtaacc 215  Q
    ||||||| |||||||| |||||| |||||||||||||||||    
T  45278552 ggactggagcaccatcccctcaccctaaaatttttgtaacc 45278592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 75 - 204
Target Start/End: Complemental strand, 18117076 - 18116947
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||  ||||| |||||||||||||    
T  18117076 ccgagagaacccgggttcgagccacgctagtgcctttagagggaggtaaatgtaattacctttgtaggtgctctttgaggtcgaagatcttccctgcctt 18116977  T
Q  175 ggactggggcaccatcacctcactctaaaa 204  Q
    |||||||||||||||| |||||| ||||||    
T  18116976 ggactggggcaccatcccctcaccctaaaa 18116947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 77 - 202
Target Start/End: Original strand, 11216771 - 11216896
Alignment:
Q  77 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgg 176  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || | ||||    
T  11216771 gagagaacccgggttcgagccccattagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttctctactttgg 11216870  T
Q  177 actggggcaccatcacctcactctaa 202  Q
    ||| ||||| |||  |||||| ||||    
T  11216871 actagggcatcattccctcaccctaa 11216896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 75 - 204
Target Start/End: Original strand, 48176399 - 48176529
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccct-gcct 173  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||| | |||||||| |||||| ||||||  |||    
T  48176399 ccgagagaatccgggttcgagccccgctagtgcctttggaaggaggtaaatgtaaatacttttgtaagtgttttttgagccggaaggttttccctcccct 48176498  T
Q  174 tggactggggcaccatcacctcactctaaaa 204  Q
    ||||||||||||||||| |||||| ||||||    
T  48176499 tggactggggcaccatcccctcaccctaaaa 48176529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 208
Target Start/End: Original strand, 23028684 - 23028816
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 175  Q
    |||||||| |||||||||| | || ||| ||||||| |||||| |||||||||||||||||| |||||| | ||||| |||||||| ||||||| ||||     
T  23028684 cgagagaatccgggttcgaactcctctaatgcctttagagggatgtaaatgtaattacctttataagtgttttttgaacccgaaggccttccctacctta 23028783  T
Q  176 gactggggcaccatcacctcactctaaaatttt 208  Q
    ||||| | |||||||  ||||  ||||||||||    
T  23028784 gactgagacaccatcctctcatcctaaaatttt 23028816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 208
Target Start/End: Original strand, 28407540 - 28407637
Alignment:
Q  107 cctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcacctcactctaaaatt 206  Q
    ||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||    |  |||||||| |||||||||||| |||||| ||||||||    
T  28407540 cctttagagggaggtaaatgtaaatacttttgtaagtgctctttgagcccgaaggt----caagccttggattggggcaccatcccctcaccctaaaatt 28407635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 75 - 214
Target Start/End: Complemental strand, 45137102 - 45136963
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45137102 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 45137003  T
Q  175 ggactggggcaccatcacctcactctaaaatttttgtaac 214  Q
    |||||||||||||||| | |||| ||||||||||||||||    
T  45137002 ggactggggcaccatcccttcaccctaaaatttttgtaac 45136963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 77 - 214
Target Start/End: Original strand, 17136389 - 17136526
Alignment:
Q  77 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgg 176  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  17136389 gagagaacccgggttcgagccccgttagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccccgccttgg 17136488  T
Q  177 actggggcaccatcacctcactctaaaatttttgtaac 214  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  17136489 actggggcaccatcccctcaccctaaaatttttgtaac 17136526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 75 - 214
Target Start/End: Original strand, 40156040 - 40156179
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40156040 ccgagagaatccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctacctt 40156139  T
Q  175 ggactggggcaccatcacctcactctaaaatttttgtaac 214  Q
    | |||||||||||||| ||||||  |||||||||||||||    
T  40156140 gaactggggcaccatcccctcaccataaaatttttgtaac 40156179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 75 - 214
Target Start/End: Complemental strand, 25987794 - 25987654
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtc-ttccctgcct 173  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  25987794 ccgagagaactcgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagtccgaaggtctttccctgcct 25987695  T
Q  174 tggactggggcaccatcacctcactctaaaatttttgtaac 214  Q
    ||| ||||||||||||| |||||| ||||||||||||||||    
T  25987694 tggtctggggcaccatcccctcaccctaaaatttttgtaac 25987654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 76 - 215
Target Start/End: Original strand, 21637898 - 21638037
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 175  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||    
T  21637898 cgagagaacccgggtttgagccccgctagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccaaaggtcttctctgccttg 21637997  T
Q  176 gactggggcaccatcacctcactctaaaatttttgtaacc 215  Q
    |||| |||||||||| |||||| |||||||||||||||||    
T  21637998 gactagggcaccatcccctcaccctaaaatttttgtaacc 21638037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 76 - 214
Target Start/End: Complemental strand, 10745363 - 10745225
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 175  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||    
T  10745363 cgagagaacccgggtccgagccccgctagtgcctttagagggaggtaaatgtaattatctttgtaagtgctctttgaacccgaaggtattccctgccttg 10745264  T
Q  176 gactggggcaccatcacctcactctaaaatttttgtaac 214  Q
    ||||||||||||||| |||||| ||||||||||||||||    
T  10745263 gactggggcaccatcccctcaccctaaaatttttgtaac 10745225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 75 - 215
Target Start/End: Complemental strand, 6672925 - 6672780
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  6672925 ccgagagaacccgggttcaagccccgctagtgcctttggagggaggtaaatgtaattacctttgtacgcgctctttgagcccgaaggtcttccctgcctt 6672826  T
Q  175 ggactggggcacca-----tcacctcactctaaaatttttgtaacc 215  Q
    ||||||||||||||     ||||||||| |||||||||||||||||    
T  6672825 ggactggggcaccatcccctcacctcaccctaaaatttttgtaacc 6672780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 75 - 214
Target Start/End: Complemental strand, 2754183 - 2754044
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||||||||| |||||| ||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  2754183 ccgagagaacccggattcgagtcccactaatgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctgcctt 2754084  T
Q  175 ggactggggcaccatcacctcactctaaaatttttgtaac 214  Q
    |||||||||||||||| |||||| ||||||||||||||||    
T  2754083 ggactggggcaccatcccctcaccctaaaatttttgtaac 2754044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 36836461 - 36836328
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36836461 ccgagagaacccgagttcgagtcccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaagatcttccctgcctt 36836362  T
Q  175 ggactggggcaccatcacctcactctaaaatttt 208  Q
    |||||||||||||||| ||||||  |||||||||    
T  36836361 ggactggggcaccatcccctcaccttaaaatttt 36836328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 75 - 215
Target Start/End: Original strand, 5039420 - 5039560
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||||| ||||||||||| |||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  5039420 ccgagagaactcgggttcgagctccgctagtgcttttagagggaggtaaacgtaattacctttgtaagtgctctttgagcccgaagatcttccctacctt 5039519  T
Q  175 ggactggggcaccatcacctcactctaaaatttttgtaacc 215  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  5039520 ggactagggcaccatcccctcactctaaaatttttgtaacc 5039560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 76 - 214
Target Start/End: Complemental strand, 36380263 - 36380125
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 175  Q
    ||||| ||| |||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  36380263 cgagaaaactcgggtttgaaccccgctagtgcctttggagggaggtaaatgtaattccctttgtaagtgctctttgagcccgaaggtcttccctaccttg 36380164  T
Q  176 gactggggcaccatcacctcactctaaaatttttgtaac 214  Q
    ||||| ||||||||| |||||| ||||||||||||||||    
T  36380163 gactgaggcaccatcccctcaccctaaaatttttgtaac 36380125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 44650393 - 44650526
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||||||||  ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  44650393 ccgagagaacccgatttcgagctccgttagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagtccgaagatcttccctgcctt 44650492  T
Q  175 ggactggggcaccatcacctcactctaaaatttt 208  Q
    |||| ||||||||||| |||||| ||||||||||    
T  44650493 ggaccggggcaccatcccctcaccctaaaatttt 44650526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 76 - 214
Target Start/End: Original strand, 26690155 - 26690293
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 175  Q
    |||||||| | ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |  ||||||||||||||||||||    
T  26690155 cgagagaatctgggttcgagtcccgctagtgcttttggagggaggtaaatgtaattacctttgtaagtgatctttgtgttcgaaggtcttccctgccttg 26690254  T
Q  176 gactggggcaccatcacctcactctaaaatttttgtaac 214  Q
    ||||| ||||||||| |||||| ||||||||||||||||    
T  26690255 gactgaggcaccatcccctcaccctaaaatttttgtaac 26690293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 78 - 213
Target Start/End: Original strand, 3200884 - 3201019
Alignment:
Q  78 agagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgga 177  Q
    |||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||| ||||||| ||    
T  3200884 agagaacctggattcgagcctcgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgttctttgagcctgaagatcttctctgccttaga 3200983  T
Q  178 ctggggcaccatcacctcactctaaaatttttgtaa 213  Q
    ||||||||||||| |||| | |||||||||||||||    
T  3200984 ctggggcaccatctcctcgccctaaaatttttgtaa 3201019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 97 - 214
Target Start/End: Complemental strand, 558549 - 558432
Alignment:
Q  97 cccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcacctca 196  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||| ||||||| |||||||||||| |||||    
T  558549 cccgctagtgcctttggagggaggtaaatgtaattacttttgtaagtgctctttgagctagaaggtcttcccttccttggaatggggcaccatcccctca 558450  T
Q  197 ctctaaaatttttgtaac 214  Q
    | ||||||||||||||||    
T  558449 ccctaaaatttttgtaac 558432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 75 - 214
Target Start/End: Complemental strand, 2357207 - 2357069
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||||||||||||||||  || ||||| ||||||||||||||||||||||| |||| |||||| |||| ||||||  |||||||||||| ||||||    
T  2357207 ccgagagaacccgggttcgagttccactagtacctttggagggaggtaaatgtaaataccattgtaaatgct-tttgagttcgaaggtcttccatgcctt 2357109  T
Q  175 ggactggggcaccatcacctcactctaaaatttttgtaac 214  Q
    |||||||||||||||| |||||| ||||||||||||||||    
T  2357108 ggactggggcaccatcccctcaccctaaaatttttgtaac 2357069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 75 - 214
Target Start/End: Complemental strand, 7860278 - 7860139
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||  ||| |||||||||| ||||||||||||||| | ||| |||||||    
T  7860278 ccgagagaacctgggtttgagccccgctagtgcctttggagggaggtaaatgtacatacatttgtaagtgttctttgagcccgaagattttctctgcctt 7860179  T
Q  175 ggactggggcaccatcacctcactctaaaatttttgtaac 214  Q
    |||||| |||| |||| |||| | ||||||||||||||||    
T  7860178 ggactgaggcatcatcccctctccctaaaatttttgtaac 7860139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 76 - 205
Target Start/End: Complemental strand, 30372811 - 30372682
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 175  Q
    ||||||| || |||||||||| ||||||||||||||||| |||||||||||||| || |||||| ||||||||||||||||||||||||||| |||||||    
T  30372811 cgagagatcctgggttcgagctccgctagtgcctttggaaggaggtaaatgtaaatatctttgttagtgctctttgagcccgaaggtcttccatgccttg 30372712  T
Q  176 gactggggcaccatcacctcactctaaaat 205  Q
     ||||||| |||||  |||||| |||||||    
T  30372711 aactggggtaccataccctcaccctaaaat 30372682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 77 - 208
Target Start/End: Original strand, 33066592 - 33066723
Alignment:
Q  77 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgg 176  Q
    ||||||| ||||||||||||  | |||||| |||||||| ||||||||||||| || |||||||||||||||||||||| |||||||||| || ||||||    
T  33066592 gagagaatccgggttcgagcttcactagtgtctttggagagaggtaaatgtaaatatctttgtaagtgctctttgagcctgaaggtcttctctaccttgg 33066691  T
Q  177 actggggcaccatcacctcactctaaaatttt 208  Q
    |||||||||||||| |||||  ||||||||||    
T  33066692 actggggcaccatcccctcatcctaaaatttt 33066723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 76 - 207
Target Start/End: Complemental strand, 13047282 - 13047156
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 175  Q
    |||||||| |||||||||||||||||  ||  |||||||||||||||||| ||||||||||   ||||||||||||||||| ||| ||||||||||||||    
T  13047282 cgagagaatccgggttcgagccccgcatgt--ctttggagggaggtaaatataattacctt---aagtgctctttgagcccaaagatcttccctgccttg 13047188  T
Q  176 gactggggcaccatcacctcactctaaaattt 207  Q
    |||||| |||||||| |||||| |||||||||    
T  13047187 gactggagcaccatcccctcaccctaaaattt 13047156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 108 - 190
Target Start/End: Original strand, 21487181 - 21487263
Alignment:
Q  108 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatc 190  Q
    |||||||||||||||||||||| ||  ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  21487181 ctttggagggaggtaaatgtaaatatttttgtaagtgctctttgagcccgaaagtcttccctgccttagactggggcaccatc 21487263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 204
Target Start/End: Complemental strand, 4553666 - 4553561
Alignment:
Q  100 gctagtgcctttggagg-gaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcacctcact 198  Q
    |||||||  |||||||| ||||||||| ||| ||| ||||||||| ||||||||| ||| |||||||| ||| ||| ||||||||||||||| |||||||    
T  4553666 gctagtgtttttggaggagaggtaaatataaatacatttgtaagtactctttgagtccggaggtcttctctgtcttagactggggcaccatcccctcact 4553567  T
Q  199 ctaaaa 204  Q
    ||||||    
T  4553566 ctaaaa 4553561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 2098875 - 2098825
Alignment:
Q  158 aaggtcttccctgccttggactggggcaccatcacctcactctaaaatttt 208  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  2098875 aaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttt 2098825  T

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Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 20961496 - 20961551
Alignment:
Q  90 ttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgc 145  Q
    ||||||| ||||||||||| |||||||||||||||||||| | | |||||||||||    
T  20961496 ttcgagctccgctagtgcccttggagggaggtaaatgtaaatccatttgtaagtgc 20961551  T

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Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 30477280 - 30477240
Alignment:
Q  113 gagggaggtaaatgtaattacctttgtaagtgctctttgag 153  Q
    ||||||||||||| ||| ||||||||||||| |||||||||    
T  30477280 gagggaggtaaatctaaatacctttgtaagttctctttgag 30477240  T

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Target: chr3 (Bit Score: 126; Significance: 5e-65; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 8400855 - 8400988
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8400855 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 8400954  T
Q  175 ggactggggcaccatcacctcactctaaaatttt 208  Q
    |||||||||||||||| |||||| ||||||||||    
T  8400955 ggactggggcaccatcccctcaccctaaaatttt 8400988  T

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Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 7417798 - 7417931
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7417798 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttcactgcctt 7417897  T
Q  175 ggactggggcaccatcacctcactctaaaatttt 208  Q
    |||||||||||||||| |||||| ||||||||||    
T  7417898 ggactggggcaccatcccctcaccctaaaatttt 7417931  T

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Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 75 - 214
Target Start/End: Original strand, 50823698 - 50823837
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50823698 ccgagagaatccgggttcgagtcccgttagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 50823797  T
Q  175 ggactggggcaccatcacctcactctaaaatttttgtaac 214  Q
    |||||||||||||||| |||||| ||||||||||||||||    
T  50823798 ggactggggcaccatcccctcaccctaaaatttttgtaac 50823837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 75 - 214
Target Start/End: Complemental strand, 50852162 - 50852023
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50852162 ccgagagaatccgggttcgagtcccgttagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 50852063  T
Q  175 ggactggggcaccatcacctcactctaaaatttttgtaac 214  Q
    |||||||||||||||| |||||| ||||||||||||||||    
T  50852062 ggactggggcaccatcccctcaccctaaaatttttgtaac 50852023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 35198765 - 35198898
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||||||||||||||||| ||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35198765 ccgagagaacccgggttcgagccccactaatgcctttgcagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 35198864  T
Q  175 ggactggggcaccatcacctcactctaaaatttt 208  Q
    ||||||| |||||||| |||||| ||||||||||    
T  35198865 ggactggagcaccatcccctcaccctaaaatttt 35198898  T

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Target: chr3; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 76 - 208
Target Start/End: Original strand, 22855888 - 22856020
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 175  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  22855888 cgagagaacccaggttcgagccccgctagtgtctttggagggaggtaaatgtaattacctttgtaagtgctctttaagcccaaaggtcttccctgccttg 22855987  T
Q  176 gactggggcaccatcacctcactctaaaatttt 208  Q
    |||||| |||||||| |||||| ||||||||||    
T  22855988 gactggagcaccatcccctcaccctaaaatttt 22856020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 75 - 215
Target Start/End: Complemental strand, 43334186 - 43334046
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||||| |||||||||||||||||| ||| |||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||    
T  43334186 ccgagagaacccgagttcgagccccgctagtgtcttgggagggaggtaaatgtaaatacttttgtaagtgctatttgagcccgaaggtcttccctgcctt 43334087  T
Q  175 ggactggggcaccatcacctcactctaaaatttttgtaacc 215  Q
    ||||||||| |||||| |||||| |||||| ||||||||||    
T  43334086 ggactggggtaccatcccctcaccctaaaaattttgtaacc 43334046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 86 - 208
Target Start/End: Original strand, 52545332 - 52545454
Alignment:
Q  86 cgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 185  Q
    ||||||||||||||||||||||||||  |||||||||||||||| ||| |||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  52545332 cgggttcgagccccgctagtgcctttaaagggaggtaaatgtaaatacttttgtaagtagtctttgagcccgaaggtcttccctgccttggactggggca 52545431  T
Q  186 ccatcacctcactctaaaatttt 208  Q
    ||||| |||||| ||||||||||    
T  52545432 ccatcccctcaccctaaaatttt 52545454  T

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Target: chr3; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 75 - 204
Target Start/End: Original strand, 34824556 - 34824685
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||| | ||||||| |||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||    
T  34824556 ccgagagaacctgagttcgagtcccgttagtgcctttgaagggaggtaaatgtaattatctttgtaagtgctctttgatcccgaaggtcttcccggcctt 34824655  T
Q  175 ggactggggcaccatcacctcactctaaaa 204  Q
    |||||||||||||||| |||||| ||||||    
T  34824656 ggactggggcaccatcccctcaccctaaaa 34824685  T

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Target: chr3; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 76 - 204
Target Start/End: Original strand, 55468000 - 55468129
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgag-cccgaaggtcttccctgcctt 174  Q
    |||||||| ||||||||||||||| ||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||    
T  55468000 cgagagaatccgggttcgagccccactaatgcgtttggagggaggtaaatgtaaatacctttgtaagtgctctttgagccccgaaggtcttctctgcctt 55468099  T
Q  175 ggactggggcaccatcacctcactctaaaa 204  Q
    |||||||||||||||| |||||| ||||||    
T  55468100 ggactggggcaccatcccctcaccctaaaa 55468129  T

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Target: chr3; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 90 - 215
Target Start/End: Original strand, 29635883 - 29636009
Alignment:
Q  90 ttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcacc-a 188  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| |    
T  29635883 ttcgagcctcgctagtgcctttgaagggaggtaaatgtaattacctttgtaagtgctctttaagcccgaatgtcttccctgccttggagtggggcaccaa 29635982  T
Q  189 tcacctcactctaaaatttttgtaacc 215  Q
    |  |||||| ||||||||| |||||||    
T  29635983 ttccctcacgctaaaatttctgtaacc 29636009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 104 - 207
Target Start/End: Complemental strand, 22371832 - 22371729
Alignment:
Q  104 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcacctcactctaaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| || ||||||||||||||| |||||| |||||    
T  22371832 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgaacccgaagatcttccctgctttagactggggcaccatcccctcaccctaaa 22371733  T
Q  204 attt 207  Q
    ||||    
T  22371732 attt 22371729  T

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Target: chr3; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 122 - 208
Target Start/End: Complemental strand, 37330692 - 37330606
Alignment:
Q  122 aaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcacctcactctaaaatttt 208  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  37330692 aaatgtaattacctttgtaagtgctctttgagtccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttt 37330606  T

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Target: chr3; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 97 - 214
Target Start/End: Complemental strand, 19872593 - 19872476
Alignment:
Q  97 cccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcacctca 196  Q
    |||||| ||||||||||||| |||||||  ||||||||||||||||| ||||||||  |||||||||||||||| ||||||||||||||||||| |||||    
T  19872593 cccgcttgtgcctttggaggaaggtaaaattaattacctttgtaagtactctttgaatccgaaggtcttccctgtcttggactggggcaccatcccctca 19872494  T
Q  197 ctctaaaatttttgtaac 214  Q
      ||||||||||| ||||    
T  19872493 tcctaaaatttttataac 19872476  T

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Target: chr3; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 122 - 207
Target Start/End: Complemental strand, 30534987 - 30534902
Alignment:
Q  122 aaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcacctcactctaaaattt 207  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||| |||||||||    
T  30534987 aaatgtaattacctttgtaagtgctctttgagcccgaagatcttccctgccttggactggggtaccatcccctcaccctaaaattt 30534902  T

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Target: chr3; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 76 - 171
Target Start/End: Complemental strand, 48078072 - 48077977
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgc 171  Q
    ||||||||| |||||||||||| | |||||||||||||||| |||||||||||| || |||||||||||||||||||||| |||||||||||||||    
T  48078072 cgagagaactcgggttcgagcctcactagtgcctttggaggaaggtaaatgtaaatatctttgtaagtgctctttgagcctgaaggtcttccctgc 48077977  T

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Target: chr3; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 122 - 208
Target Start/End: Complemental strand, 37454829 - 37454743
Alignment:
Q  122 aaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcacctcactctaaaatttt 208  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||| |||||| ||||||||||    
T  37454829 aaatataattacctttgtaagtgctctttgagcccgaaggtcttccctaccttagattggggcaccatcccctcaccctaaaatttt 37454743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 25910738 - 25910658
Alignment:
Q  135 tttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcacctcactctaaaatttttgtaacc 215  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||| |||||| |||||||||||||||||    
T  25910738 tttgtaagtgctctttgagtccgaagatcttccctgccttggactgaggcaccatcccctcaccctaaaatttttgtaacc 25910658  T

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Target: chr3; HSP #19
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 75 - 215
Target Start/End: Complemental strand, 50726129 - 50725989
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||||  ||||||||||||||| ||||| ||||||||| |||||||| ||||||| ||||||||| || ||||||  |||| ||||||||| | ||    
T  50726129 ccgagagaattcgggttcgagccccgttagtgtctttggaggaaggtaaatataattacttttgtaagttctttttgagttcgaaagtcttccctacttt 50726030  T
Q  175 ggactggggcaccatcacctcactctaaaatttttgtaacc 215  Q
    ||| |||||||||||| | |||| ||| || ||||||||||    
T  50726029 ggattggggcaccatcccttcaccctacaaattttgtaacc 50725989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 75 - 215
Target Start/End: Original strand, 50786719 - 50786859
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||||  ||||||||||||||| ||||| ||||||||| |||||||| ||||||| ||||||||| || ||||||  |||| ||||||||| | ||    
T  50786719 ccgagagaattcgggttcgagccccgttagtgtctttggaggaaggtaaatataattacttttgtaagttctttttgagttcgaaagtcttccctacttt 50786818  T
Q  175 ggactggggcaccatcacctcactctaaaatttttgtaacc 215  Q
    ||| |||||||||||| | |||| ||| || ||||||||||    
T  50786819 ggattggggcaccatcccttcaccctacaaattttgtaacc 50786859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 89 - 215
Target Start/End: Original strand, 42876229 - 42876355
Alignment:
Q  89 gttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcacca 188  Q
    ||||||||||  |||||| |||| || ||||||||||||||||||||||||||||||||||||| |  ||| |||||||||  |||||||| ||||||||    
T  42876229 gttcgagcccgactagtgtctttagatggaggtaaatgtaattacctttgtaagtgctctttgaacttgaatgtcttccctatcttggactagggcacca 42876328  T
Q  189 tcacctcactctaaaatttttgtaacc 215  Q
    ||  ||||| ||||| ||| |||||||    
T  42876329 tcctctcaccctaaattttctgtaacc 42876355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 209
Target Start/End: Complemental strand, 30203744 - 30203652
Alignment:
Q  114 agggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcacctcactctaaaattttt 209  Q
    ||||||||||||||||  |||||||||| || ||||||||| ||||||| |||| || |||| |||||||||||||| ||||||||||||| ||||    
T  30203744 agggaggtaaatgtaa--acctttgtaaatgttctttgagctcgaaggttttcc-tgtcttgaactggggcaccatcccctcactctaaaaatttt 30203652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 208
Target Start/End: Original strand, 25589253 - 25589347
Alignment:
Q  107 cctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcacctcactctaaaatt 206  Q
    |||||||| |||||||||||||| |||||| |||||||||||||||| ||||       ||||||||||||| |||||||| || |||||| ||||||||    
T  25589253 cctttggaaggaggtaaatgtaaataccttagtaagtgctctttgagtccga-------ccctgccttggacgggggcaccctcccctcaccctaaaatt 25589345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 773666 - 773717
Alignment:
Q  164 ttccctgccttggactggggcaccatcacctcactctaaaatttttgtaacc 215  Q
    |||||| |||||||||||||||||||| |||||| ||| |||||||||||||    
T  773666 ttcccttccttggactggggcaccatcccctcaccctagaatttttgtaacc 773717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 215
Target Start/End: Complemental strand, 39438903 - 39438821
Alignment:
Q  132 acctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcacctcactctaaaatttttgtaacc 215  Q
    ||||||||||||| ||||| |  || || ||||| ||| ||||| |||||||||||||| |||||| |||||||||||||||||    
T  39438903 acctttgtaagtgttctttaaatccaaaagtctttcctaccttgaactggggcaccatc-cctcaccctaaaatttttgtaacc 39438821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 75 - 215
Target Start/End: Original strand, 19723311 - 19723451
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  19723311 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccaaagatcttccctgcctt 19723410  T
Q  175 ggactggggcaccatcacctcactctaaaatttttgtaacc 215  Q
    |||||||||||||||| |||||| |||||||||||||||||    
T  19723411 ggactggggcaccatcccctcaccctaaaatttttgtaacc 19723451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 76 - 215
Target Start/End: Original strand, 11404002 - 11404141
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 175  Q
    |||||||||| ||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11404002 cgagagaacctgggttcgagcctcgctagtgtctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 11404101  T
Q  176 gactggggcaccatcacctcactctaaaatttttgtaacc 215  Q
    ||||||||||||||| |||||| |||||||||||||||||    
T  11404102 gactggggcaccatcccctcaccctaaaatttttgtaacc 11404141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 75 - 214
Target Start/End: Original strand, 4840140 - 4840279
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| || |||||||||||||||||    
T  4840140 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtcattaccattgtaagtgctctttgagtccaaaggtcttccctgcctt 4840239  T
Q  175 ggactggggcaccatcacctcactctaaaatttttgtaac 214  Q
    ||||| |||||||||| |||||| ||||||||| ||||||    
T  4840240 ggactagggcaccatcccctcaccctaaaatttctgtaac 4840279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 77 - 215
Target Start/End: Original strand, 29767190 - 29767326
Alignment:
Q  77 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgg 176  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29767190 gagagaacccggggtcgagccccgctagtgcctttgaagggaggtaaat--aattacctttgtaagtgttctttgagcccgaaggtcttccctgccttgg 29767287  T
Q  177 actggggcaccatcacctcactctaaaatttttgtaacc 215  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  29767288 actggggcaccatcccctcaccctaaaatttttgtaacc 29767326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 77 - 208
Target Start/End: Complemental strand, 32296769 - 32296638
Alignment:
Q  77 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgg 176  Q
    |||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32296769 gagagaacccgggttcaagccctgctagtgcctttgaagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgg 32296670  T
Q  177 actggggcaccatcacctcactctaaaatttt 208  Q
    | |||||||||||| |||||| ||||||||||    
T  32296669 attggggcaccatcccctcaccctaaaatttt 32296638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 93 - 204
Target Start/End: Original strand, 17095568 - 17095679
Alignment:
Q  93 gagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcac 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  17095568 gagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaaatgctctttgagcccgaaggtcttccctgccttggactggggcaccatccc 17095667  T
Q  193 ctcactctaaaa 204  Q
    ||||| ||||||    
T  17095668 ctcaccctaaaa 17095679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 75 - 214
Target Start/End: Original strand, 22711509 - 22711648
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||||| |||||| ||| ||  ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  22711509 ccgagagaactcgggtttgagtccaactaatgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccttgcctt 22711608  T
Q  175 ggactggggcaccatcacctcactctaaaatttttgtaac 214  Q
    |||||||||||||||| |||||  ||||||||||||||||    
T  22711609 ggactggggcaccatcccctcatcctaaaatttttgtaac 22711648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 78 - 214
Target Start/End: Complemental strand, 28739690 - 28739554
Alignment:
Q  78 agagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgga 177  Q
    |||||||| |||||| |||||| |||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  28739690 agagaacctgggttcaagccccactagtgcctttggaggaaagtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctaccttgga 28739591  T
Q  178 ctggggcaccatcacctcactctaaaatttttgtaac 214  Q
    |||  |||||||| |||||| |||||| |||||||||    
T  28739590 ctgcagcaccatcccctcaccctaaaaattttgtaac 28739554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 108 - 214
Target Start/End: Original strand, 36261679 - 36261785
Alignment:
Q  108 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcacctcactctaaaattt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||  ||||||||    
T  36261679 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaagatcttccctgccttgaactggggcaccatcccctcaccttaaaattt 36261778  T
Q  208 ttgtaac 214  Q
    |||||||    
T  36261779 ttgtaac 36261785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 76 - 215
Target Start/End: Original strand, 41553286 - 41553425
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 175  Q
    |||||||||||| ||||||| ||| ||| || ||||||||| | |||||||||| |||||||||||||| ||||||||| |||||||||||||||||||     
T  41553286 cgagagaacccgagttcgagtcccactaatgtctttggaggaacgtaaatgtaaatacctttgtaagtgttctttgagctcgaaggtcttccctgcctta 41553385  T
Q  176 gactggggcaccatcacctcactctaaaatttttgtaacc 215  Q
    |||||| |||||||| |||||| |||||||||||||||||    
T  41553386 gactggagcaccatcccctcaccctaaaatttttgtaacc 41553425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 104 - 187
Target Start/End: Complemental strand, 21355087 - 21355004
Alignment:
Q  104 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcacc 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21355087 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgaacccgaaggtcttccctgccttggactggggcacc 21355004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 75 - 213
Target Start/End: Original strand, 11610280 - 11610418
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||| | ||| |||||||| |||||||||||||||||  |||||||| ||| || ||||||||||||| ||| |||||||||||||| | |  |||    
T  11610280 ccgagagatctcggattcgagcctcgctagtgcctttggagaaaggtaaatataaatatctttgtaagtgctgtttaagcccgaaggtcttacttatctt 11610379  T
Q  175 ggactggggcaccatcacctcactctaaaatttttgtaa 213  Q
    |||||||||||||||| |||||| |||||||||||||||    
T  11610380 ggactggggcaccatcccctcaccctaaaatttttgtaa 11610418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 121 - 215
Target Start/End: Complemental strand, 11909509 - 11909415
Alignment:
Q  121 taaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcacctcactctaaaatttttgtaacc 215  Q
    ||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||    
T  11909509 taaatgtaaatacctttctaagtgctctttgagctcgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaaattttgtaacc 11909415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 78 - 208
Target Start/End: Original strand, 30682842 - 30682971
Alignment:
Q  78 agagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgga 177  Q
    ||||| |||| ||||||||||| || |||||||||||| ||| ||||||||| ||| |||||||||| ||||||||||||||| ||||||||||||||||    
T  30682842 agagagcccgtgttcgagccccactggtgcctttggagagagataaatgtaaatacttttgtaagtgttctttgagcccgaagatcttccctgccttgga 30682941  T
Q  178 ctggggcaccatcacctcactctaaaatttt 208  Q
    || |||||||||| ||||||  |||||||||    
T  30682942 ct-gggcaccatcccctcaccttaaaatttt 30682971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 108 - 209
Target Start/End: Original strand, 43288105 - 43288206
Alignment:
Q  108 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcacctcactctaaaattt 207  Q
    |||||||||||||||||||||||||||||||||| || | |||||| ||||||||||||||||||||||||||| |||||||| |||||| ||||| |||    
T  43288105 ctttggagggaggtaaatgtaattacctttgtaattgatttttgagtccgaaggtcttccctgccttggactggagcaccatcccctcaccctaaatttt 43288204  T
Q  208 tt 209  Q
    ||    
T  43288205 tt 43288206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 90 - 174
Target Start/End: Complemental strand, 24475113 - 24475029
Alignment:
Q  90 ttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||    
T  24475113 ttcgagctccgctagtgcctttggagggaggtaaatgtaaatacctttgtaagtgttctttgagcccgaaggtctttcctgcctt 24475029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 77 - 151
Target Start/End: Complemental strand, 27881118 - 27881044
Alignment:
Q  77 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttg 151  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  27881118 gagagaacccgggttcgagccccgctagtgcctttgaagggaggtaaatgtaaatacctttgtaagtgctctttg 27881044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 77 - 151
Target Start/End: Complemental strand, 28021299 - 28021225
Alignment:
Q  77 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttg 151  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  28021299 gagagaacccgggttcgagccccgctagtgcctttgaagggaggtaaatgtaaatacctttgtaagtgctctttg 28021225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 27879620 - 27879553
Alignment:
Q  147 ctttgagcccgaaggtcttccctgccttggactggggcaccatcacctcactctaaaatttttgtaac 214  Q
    ||||||||| |||| |||||||| |||||||||||||||||||| |||||| ||||||||||||||||    
T  27879620 ctttgagcctgaagatcttccctaccttggactggggcaccatcccctcaccctaaaatttttgtaac 27879553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 28019801 - 28019734
Alignment:
Q  147 ctttgagcccgaaggtcttccctgccttggactggggcaccatcacctcactctaaaatttttgtaac 214  Q
    ||||||||| |||| |||||||| |||||||||||||||||||| |||||| ||||||||||||||||    
T  28019801 ctttgagcctgaagatcttccctaccttggactggggcaccatcccctcaccctaaaatttttgtaac 28019734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 214
Target Start/End: Complemental strand, 44742038 - 44741914
Alignment:
Q  87 gggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcac 186  Q
    ||||||||||| ||||||||||||||||| || || ||| | | | |||||||||||||||    || || | |||||| |||||||||||||||||  |    
T  44742038 gggttcgagcctcgctagtgcctttggagagaagttaatattaatccctttgtaagtgctc--caagtcctatggtcttacctgccttggactggggtgc 44741941  T
Q  187 catcacctcactctaaaatttttgtaac 214  Q
    |||| |||||| || |||||||||||||    
T  44741940 catcccctcaccct-aaatttttgtaac 44741914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 75 - 215
Target Start/End: Original strand, 17064323 - 17064463
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  17064323 ccgagagaacccgggttcgagcctcgctagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttaagcccgaaggtcttccctgcctt 17064422  T
Q  175 ggactggggcaccatcacctcactctaaaatttttgtaacc 215  Q
    |||||||||||||||| |||||| |||||||||||||||||    
T  17064423 ggactggggcaccatcccctcaccctaaaatttttgtaacc 17064463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 78 - 209
Target Start/End: Complemental strand, 20983132 - 20983001
Alignment:
Q  78 agagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgga 177  Q
    |||||| |||||||||||||||||||||||||| |||| |||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  20983132 agagaatccgggttcgagccccgctagtgccttcggagagaggtaaatgcaattacatttgtaagtgctctttgagcccgaaagtcttccctgccttgga 20983033  T
Q  178 ctggggcaccatcacctcactctaaaattttt 209  Q
    ||||||||||||| |||||| |||||| ||||    
T  20983032 ctggggcaccatcccctcaccctaaaaatttt 20983001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 37976546 - 37976683
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaat----gtaattacctttgtaagtgctctttgagcccgaaggtcttccctg 170  Q
    ||||||||||| ||||||||||||||||||||| |||| ||||||||||||    |||| |||||||||||||||| ||||||||||||||| || ||||    
T  37976546 ccgagagaacctgggttcgagccccgctagtgcatttgaagggaggtaaattaatgtaaatacctttgtaagtgctatttgagcccgaaggtttttcctg 37976645  T
Q  171 ccttggactggggcaccatcacctcactctaaaatttt 208  Q
    ||||| |||||||||||||| |||||| ||||||||||    
T  37976646 ccttgaactggggcaccatcccctcaccctaaaatttt 37976683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 116 - 208
Target Start/End: Original strand, 41910865 - 41910957
Alignment:
Q  116 ggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcacctcactctaaaatttt 208  Q
    ||||||||||||||||| ||||||||||| |||||||||||||| |||||| |||||||| |||||||||||||| ||||||  |||||||||    
T  41910865 ggaggtaaatgtaattaactttgtaagtgttctttgagcccgaatgtcttctctgccttgaactggggcaccatcccctcaccttaaaatttt 41910957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 202
Target Start/End: Original strand, 31673863 - 31673956
Alignment:
Q  108 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcacctcactctaa 202  Q
    |||||||| |||| |||||||| | |||||| |||||| |||||||||| |||||| |||||||||||||||||||||||| | |||||| ||||    
T  31673863 ctttggagagaggaaaatgtaaatccctttg-aagtgccctttgagccctaaggtcctccctgccttggactggggcaccaacccctcaccctaa 31673956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 208
Target Start/End: Complemental strand, 5009531 - 5009416
Alignment:
Q  92 cgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatca 191  Q
    ||||||||| ||||| |||||||| ||| ||||||||| ||  ||||||| || |||||||  ||||||||||||| ||||||| ||||| ||| ||||     
T  5009531 cgagccccgttagtgtctttggagagagataaatgtaaatatttttgtaaatgttctttgaatccgaaggtcttccatgccttgaactggtgcatcatc- 5009433  T
Q  192 cctcactctaaaatttt 208  Q
    || ||| ||||||||||    
T  5009432 ccccaccctaaaatttt 5009416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 35237102 - 35237052
Alignment:
Q  164 ttccctgccttggactggggcaccatcacctcactctaaaatttttgtaac 214  Q
    ||||||||||||||||| ||||||||| |||||||||||||||| ||||||    
T  35237102 ttccctgccttggactgaggcaccatcccctcactctaaaatttctgtaac 35237052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 187
Target Start/End: Complemental strand, 39162977 - 39162875
Alignment:
Q  85 ccgggttcgagccccgctagtgcctttggaggg---aggtaaatgtaattacctt-tgtaagtgctctttgagcccgaaggtcttccctgccttggactg 180  Q
    ||||||||||||||  |||||||| |||||||    |||||||||||| |||||| ||||| |||||||||||||    |||||||  ||||||||||||    
T  39162977 ccgggttcgagcccaactagtgcccttggaggaggaaggtaaatgtaaataccttgtgtaaatgctctttgagcc----ggtcttctgtgccttggactg 39162882  T
Q  181 gggcacc 187  Q
    |||||||    
T  39162881 gggcacc 39162875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 35237154 - 35237103
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgt 127  Q
    |||||||| | || ||||||||||||||||| ||||| ||||||||||||||    
T  35237154 cgagagaatctggattcgagccccgctagtgtctttgaagggaggtaaatgt 35237103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 18303409 - 18303352
Alignment:
Q  108 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctt 165  Q
    ||||||||| | ||||| |||| ||| |||||||||||||||| | ||||||||||||    
T  18303409 ctttggaggaaagtaaacgtaaatacttttgtaagtgctctttaaacccgaaggtctt 18303352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 75 - 204
Target Start/End: Complemental strand, 30054574 - 30054445
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30054574 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaaatgctctttgagcccgaaggtcttccctgcctt 30054475  T
Q  175 ggactggggcaccatcacctcactctaaaa 204  Q
    |||||||||||||||| |||||| ||||||    
T  30054474 ggactggggcaccatcccctcaccctaaaa 30054445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 75 - 214
Target Start/End: Original strand, 20014458 - 20014597
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  20014458 ccgagagaacccgggttcgagtcccgctagtacctttggagggaggtaaatgtaattacatttgtaaatgctctttgagcctgaaggtcttccctgcctt 20014557  T
Q  175 ggactggggcaccatcacctcactctaaaatttttgtaac 214  Q
    |||||| ||||||||| |||||| ||||||||||||||||    
T  20014558 ggactgaggcaccatcccctcaccctaaaatttttgtaac 20014597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 76 - 215
Target Start/End: Complemental strand, 30370191 - 30370052
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 175  Q
    |||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30370191 cgagagaatccgggttcgagccccactagtgtctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 30370092  T
Q  176 gactggggcaccatcacctcactctaaaatttttgtaacc 215  Q
    ||||||||||||||| ||||||  |||||||  |||||||    
T  30370091 gactggggcaccatcccctcaccttaaaattcatgtaacc 30370052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 75 - 215
Target Start/End: Original strand, 45324006 - 45324146
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||| |||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||    
T  45324006 ccgagagaacctgggttccagccccgctagtgcttttggagggaggtaaatgtaaatacctttgtaagtgctccttgagcccgaaggtcttccctgcttt 45324105  T
Q  175 ggactggggcaccatcacctcactctaaaatttttgtaacc 215  Q
    |||||||||||||||| |||||| |||||||||||| ||||    
T  45324106 ggactggggcaccatcccctcaccctaaaatttttgcaacc 45324146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 76 - 215
Target Start/End: Original strand, 12025182 - 12025321
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 175  Q
    |||||||||| |||||||||||||  ||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  12025182 cgagagaacctgggttcgagccccattagtgcctttggaggaaggtaaatgtaattacctttgtaagtactatttgagcccgaaggtcttccctgccttg 12025281  T
Q  176 gactggggcaccatcacctcactctaaaatttttgtaacc 215  Q
    ||||||||||||| | |||||| |||||||||||||||||    
T  12025282 gactggggcaccaccccctcaccctaaaatttttgtaacc 12025321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 76 - 204
Target Start/End: Original strand, 21090116 - 21090244
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 175  Q
    ||||||||  ||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||    
T  21090116 cgagagaattcgggttcgagccccgctagtgccgttggagggaggtaaatgtaaatacatttgtaaatgctctttgagcccgaaggtcttccctgccttg 21090215  T
Q  176 gactggggcaccatcacctcactctaaaa 204  Q
    ||||||||||||||| |||||||||||||    
T  21090216 gactggggcaccatcccctcactctaaaa 21090244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 22024121 - 22024242
Alignment:
Q  93 gagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcac 192  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  22024121 gagccctgctagtgcctttggatggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttctctgccttggactggggcaccatccc 22024220  T
Q  193 ctcactctaaaatttttgtaac 214  Q
    ||||| ||||||||| ||||||    
T  22024221 ctcaccctaaaatttatgtaac 22024242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 75 - 213
Target Start/End: Original strand, 4573379 - 4573517
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||||||||||||||||| ||| || |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||  ||    
T  4573379 ccgagagaacccgggttcgagccccactaatgtctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctgtttt 4573478  T
Q  175 ggactggggcaccatcacctcactctaaaatttttgtaa 213  Q
    |||||| ||||| ||| |||||| |||||||||||||||    
T  4573479 ggactgaggcactatcccctcaccctaaaatttttgtaa 4573517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 75 - 206
Target Start/End: Complemental strand, 30850972 - 30850841
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||||| ||||||||||||||| ||||| |||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||| |||| |||    
T  30850972 ccgagagaactcgggttcgagccccgttagtgtctttggagggaggtaaatataattgcctttgtaagtgctctttgaacccgaaggtctttcctgtctt 30850873  T
Q  175 ggactggggcaccatcacctcactctaaaatt 206  Q
    |||||||||||||||| |||||| ||||||||    
T  30850872 ggactggggcaccatcccctcaccctaaaatt 30850841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 104 - 214
Target Start/End: Complemental strand, 14498182 - 14498072
Alignment:
Q  104 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcacctcactctaaa 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||| |||||| |||||    
T  14498182 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagaccaaaggtcttccctgccttggactggggcgccatcccctcaccctaaa 14498083  T
Q  204 atttttgtaac 214  Q
    |||||||||||    
T  14498082 atttttgtaac 14498072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 88 - 215
Target Start/End: Complemental strand, 33763373 - 33763246
Alignment:
Q  88 ggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcacc 187  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | |||||||||||| || |||||||||||| ||||||||| |    
T  33763373 ggttcgagccccgctagtgcctttagagggaggcaaatgtaattacctttgtaagtgttttttgagcccgaaagttttccctgccttgaactggggcatc 33763274  T
Q  188 atcacctcactctaaaatttttgtaacc 215  Q
    ||| |||||| ||||||||| |||||||    
T  33763273 atcccctcaccctaaaatttctgtaacc 33763246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 101 - 215
Target Start/End: Complemental strand, 33762646 - 33762532
Alignment:
Q  101 ctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcacctcactct 200  Q
    ||||||||||| |||||||| ||||||||||||||||||||||| | |||||||||||| || |||||||||||||||||||||| |||| |||||| ||    
T  33762646 ctagtgcctttagagggaggcaaatgtaattacctttgtaagtgttttttgagcccgaaagttttccctgccttggactggggcatcatcccctcaccct 33762547  T
Q  201 aaaatttttgtaacc 215  Q
    |||||||||||||||    
T  33762546 aaaatttttgtaacc 33762532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 119 - 215
Target Start/End: Complemental strand, 35371833 - 35371732
Alignment:
Q  119 ggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcacca-----tcacctcactctaaaatttttgtaa 213  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||     ||||||||| |||||||||||||||    
T  35371833 ggtaaatgtaattacctttgtaagtgctctttgagcccgaagttcttccctgccttggactggggcaccatcccctcacctcaccctaaaatttttgtaa 35371734  T
Q  214 cc 215  Q
    ||    
T  35371733 cc 35371732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 44438670 - 44438562
Alignment:
Q  87 gggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcac 186  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||| ||||| |   |||||||||||||||||||| ||||||| ||    
T  44438670 gggttcgagctccgctaatgcctttggagggaggtaaatgtaattacttttgtaagtgttctttaaattcgaaggtcttccctgccttgaactggggtac 44438571  T
Q  187 catcacctc 195  Q
    |||| ||||    
T  44438570 catcccctc 44438562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 134 - 215
Target Start/End: Original strand, 35618034 - 35618115
Alignment:
Q  134 ctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcacctcactctaaaatttttgtaacc 215  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| |||||| |||||| ||||||||||    
T  35618034 ctttgtaagtgctctttgagcccgaaggtcttccttgctttggactggggtaccatcccctcaccctaaaaattttgtaacc 35618115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 17015192 - 17015260
Alignment:
Q  147 ctttgagcccgaaggtcttccctgccttggactggggcaccatcacctcactctaaaatttttgtaacc 215  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||  ||||||||| |||||||    
T  17015192 ctttgagcccgaaggtcttccctgctttggactggggcaccatcccctcatcctaaaatttatgtaacc 17015260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 15034455 - 15034501
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggt 121  Q
    |||| ||||||| |||||||||||  |||||||||||||||||||||    
T  15034455 ccgaaagaacccaggttcgagccctactagtgcctttggagggaggt 15034501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 75 - 215
Target Start/End: Complemental strand, 46494530 - 46494390
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  46494530 ccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctacctt 46494431  T
Q  175 ggactggggcaccatcacctcactctaaaatttttgtaacc 215  Q
    |||||||||||||||| |||||| |||||| ||||||||||    
T  46494430 ggactggggcaccatcccctcaccctaaaaattttgtaacc 46494390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 75 - 214
Target Start/End: Original strand, 51066493 - 51066632
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  51066493 ccgagagaactcgggttcgagctccgctagtgcctttggagggaggtaaatataattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 51066592  T
Q  175 ggactggggcaccatcacctcactctaaaatttttgtaac 214  Q
    |||||||||||||||| |||||| ||||||  ||||||||    
T  51066593 ggactggggcaccatcccctcaccctaaaaaatttgtaac 51066632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 76 - 207
Target Start/End: Original strand, 36192542 - 36192673
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 175  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||    
T  36192542 cgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaattacttttgtaaatgctctttgagcccgaaggtcttccctaccttg 36192641  T
Q  176 gactggggcaccatcacctcactctaaaattt 207  Q
    ||||||||||||||| |||||| |||||||||    
T  36192642 gactggggcaccatcccctcaccctaaaattt 36192673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 75 - 214
Target Start/End: Complemental strand, 51714097 - 51713958
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  51714097 ccgagagaacccgggttcgagccccactagtgcctttgaagggaggtaaatataaatacctttgtaagtgctctttgagcccgaaggtcttccctgcttt 51713998  T
Q  175 ggactggggcaccatcacctcactctaaaatttttgtaac 214  Q
    | |||||||||||||| |||||| ||||||||||||||||    
T  51713997 gaactggggcaccatcccctcaccctaaaatttttgtaac 51713958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 75 - 214
Target Start/End: Original strand, 32139164 - 32139303
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||    
T  32139164 ccgagagaacctgggttcgaaccccgctagtgtctttggagggaggtaaatgtaattacctttgtaagtgttctttgagcctgaaggtcttctctgcctt 32139263  T
Q  175 ggactggggcaccatcacctcactctaaaatttttgtaac 214  Q
    |||||||||||||||| | |||| ||||| ||||| ||||    
T  32139264 ggactggggcaccatcccttcaccctaaattttttataac 32139303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 7173717 - 7173584
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||||||  ||||| || |||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||    
T  7173717 ccgagagaacctaggttcaagacccgctagtgcctttggaaggaggtaaatgtcaatacctttgtaagtgctctttgagcccgaaggtcttccctgcgtt 7173618  T
Q  175 ggactggggcaccatcacctcactctaaaatttt 208  Q
    |||||||||||||||| |||||| ||||||||||    
T  7173617 ggactggggcaccatcccctcaccctaaaatttt 7173584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 30970516 - 30970383
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||| ||||||||||||| | |||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||    
T  30970516 ccgagagaatccgggttcgagcctcactagtgcctttgaagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctacctt 30970417  T
Q  175 ggactggggcaccatcacctcactctaaaatttt 208  Q
     ||||||||||||||| |||||| ||||||||||    
T  30970416 agactggggcaccatcccctcaccctaaaatttt 30970383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 75 - 214
Target Start/End: Original strand, 50905748 - 50905887
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||| ||||||||||||| ||||||    
T  50905748 ccgagagaatctgggttcgagccccgctagtgcctttggagagaggtaaatgtaattatctttgtaggtgctctttgagtccgaaggtcttccatgcctt 50905847  T
Q  175 ggactggggcaccatcacctcactctaaaatttttgtaac 214  Q
    | ||||||||||||||   |||| ||||||||||||||||    
T  50905848 gaactggggcaccatcctttcaccctaaaatttttgtaac 50905887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 75 - 177
Target Start/End: Original strand, 8740448 - 8740550
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  8740448 ccgagagatcccgggttcgagccccgctagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccatgcctt 8740547  T
Q  175 gga 177  Q
    |||    
T  8740548 gga 8740550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 39863910 - 39863777
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| || ||||    
T  39863910 ccgagagaacccgggttcggaccccgctagtgcctttggagggaagtaaatgtaattacctttgtaagtgctctttgaacccgaaggtcttctctacctt 39863811  T
Q  175 ggactggggcaccatcacctcactctaaaatttt 208  Q
    |||||| | ||| ||| |||||| ||||||||||    
T  39863810 ggactgagacactatcccctcaccctaaaatttt 39863777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 104 - 214
Target Start/End: Original strand, 29576444 - 29576554
Alignment:
Q  104 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcacctcactctaaa 203  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||| |||||    
T  29576444 gtgcctttggagggaggtaaatgtaaataactttgtaagtgctctttgagcccgaaggtcttccctgccttggattggggcaccaccccctcaccctaaa 29576543  T
Q  204 atttttgtaac 214  Q
    |||||||||||    
T  29576544 atttttgtaac 29576554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 103 - 215
Target Start/End: Original strand, 55231715 - 55231827
Alignment:
Q  103 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcacctcactctaa 202  Q
    |||||||||| |||||||||||||||| ||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||| ||||    
T  55231715 agtgcctttgaagggaggtaaatgtaaatacttttgtaagtgctctttgagcctgaatgtcttccctgccttggactggggcaccatcccctcaccctaa 55231814  T
Q  203 aatttttgtaacc 215  Q
    |||||||||||||    
T  55231815 aatttttgtaacc 55231827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 75 - 214
Target Start/End: Complemental strand, 47627127 - 47626986
Alignment:
Q  75 ccgagagaacccgggttcgag--ccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcc 172  Q
    |||||||||||||| ||||||  |||| |||||||||||| |||||||||||||||| ||||| | ||| | |||||||| | |||||||||||||||||    
T  47627127 ccgagagaacccggattcgagagccccactagtgcctttgaagggaggtaaatgtaaatacctctataaatactctttgaactcgaaggtcttccctgcc 47627028  T
Q  173 ttggactggggcaccatcacctcactctaaaatttttgtaac 214  Q
    |||||||||  ||||||| |||||| ||||||||||||||||    
T  47627027 ttggactggaacaccatctcctcaccctaaaatttttgtaac 47626986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 90 - 215
Target Start/End: Original strand, 2570216 - 2570341
Alignment:
Q  90 ttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccat 189  Q
    ||||||| ||||| |||||||||||||||||||||| ||| || | || ||| || |||||||| |||||| ||||||||||||||||||||||||||||    
T  2570216 ttcgagctccgctggtgcctttggagggaggtaaatataaatatcattataaatgttctttgagtccgaagatcttccctgccttggactggggcaccat 2570315  T
Q  190 cacctcactctaaaatttttgtaacc 215  Q
    | |||||| |||||||||||||||||    
T  2570316 cccctcaccctaaaatttttgtaacc 2570341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 113 - 214
Target Start/End: Original strand, 676766 - 676867
Alignment:
Q  113 gagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcacctcactctaaaatttttgta 212  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||| ||| ||  |||||||||||||    
T  676766 gagggaggtaagtgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactgtaacaccatccccttaccttaaaatttttgta 676865  T
Q  213 ac 214  Q
    ||    
T  676866 ac 676867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 131 - 208
Target Start/End: Complemental strand, 22304167 - 22304090
Alignment:
Q  131 tacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcacctcactctaaaatttt 208  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||| ||||||||||    
T  22304167 tacctttgtaagtgctctttgagcccgaaggtcttccctaccttggactggggcaccatcctctcaccctaaaatttt 22304090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 101 - 214
Target Start/End: Original strand, 41523423 - 41523536
Alignment:
Q  101 ctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcacctcactct 200  Q
    |||||| |||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||  |||||| |||| ||||||| | |||  ||    
T  41523423 ctagtgtctttggagggaggtaaatgtaaatacctttataagtgctctttgagctcgaaggtcttccctatcttggattgggacaccatcccttcatcct 41523522  T
Q  201 aaaatttttgtaac 214  Q
    |||| |||||||||    
T  41523523 aaaaattttgtaac 41523536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 204
Target Start/End: Complemental strand, 2294841 - 2294719
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 175  Q
    ||||||||| ||||||||||   |||||||||||||||||| ||||||||||||||||      ||||| || ||||||||||| |||||| |||||||     
T  2294841 cgagagaactcgggttcgagtttcgctagtgcctttggaggaaggtaaatgtaattac------aagtgttcgttgagcccgaaagtcttcactgcctta 2294748  T
Q  176 gactggggcaccatcacctcactctaaaa 204  Q
    ||||||||||||||| |||||| ||||||    
T  2294747 gactggggcaccatcccctcaccctaaaa 2294719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 108 - 215
Target Start/End: Complemental strand, 4080651 - 4080544
Alignment:
Q  108 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcacctcactctaaaattt 207  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||| | ||| |||||| ||| |||||| ||| |||||||| |||| |  ||||||||    
T  4080651 ctttggagggaggtaaatgtaattacatttgtaaatgctctttgagtctgaatgtcttctctgtcttggattggagcaccatcccctcgccttaaaattt 4080552  T
Q  208 ttgtaacc 215  Q
    ||||||||    
T  4080551 ttgtaacc 4080544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 215
Target Start/End: Complemental strand, 50399763 - 50399634
Alignment:
Q  86 cgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 185  Q
    ||||||||||||||||||||||  ||||||| |||||||||||| |||||||||||||| ||||||||||  || |||||| || |||||||   |||||    
T  50399763 cgggttcgagccccgctagtgctcttggaggaaggtaaatgtaaatacctttgtaagtgttctttgagcctaaatgtcttctctaccttggataagggca 50399664  T
Q  186 ccatcacctcactctaaaatttttgtaacc 215  Q
     ||||  ||||| ||||| ||| |||||||    
T  50399663 tcatccgctcaccctaaattttatgtaacc 50399634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 86 - 205
Target Start/End: Complemental strand, 51279154 - 51279035
Alignment:
Q  86 cgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 185  Q
    |||||| ||||||  ||| ||| ||| ||||||||| ||||||| ||| |||||||||||||||||||||| |||||||||||  ||||||| |  ||||    
T  51279154 cgggtttgagccctactaatgcttttagagggaggtcaatgtaaatacttttgtaagtgctctttgagcccaaaggtcttcccaaccttggattaaggca 51279055  T
Q  186 ccatcacctcactctaaaat 205  Q
    ||||| |||||| |||||||    
T  51279054 ccatcccctcaccctaaaat 51279035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 178
Target Start/End: Original strand, 22423378 - 22423479
Alignment:
Q  77 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgg 176  Q
    |||||| | ||| ||||||||| | |||| ||||||||||||||||||||||| ||| |||||||||| |||||| |  |||||||||||||||| ||||    
T  22423378 gagagatctcggattcgagcccggttagtacctttggagggaggtaaatgtaaatacttttgtaagtgttctttgtgttcgaaggtcttccctgctttgg 22423477  T
Q  177 ac 178  Q
    ||    
T  22423478 ac 22423479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 213
Target Start/End: Complemental strand, 23084530 - 23084459
Alignment:
Q  142 gtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcacctcactctaaaatttttgtaa 213  Q
    |||||||||||| ||||||||||||||| ||||| ||||||| |||||| |||||| |||||| ||||||||    
T  23084530 gtgctctttgagtccgaaggtcttccctaccttgaactggggtaccatctcctcaccctaaaaattttgtaa 23084459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 37990663 - 37990613
Alignment:
Q  139 taagtgctctttgagcccgaaggtcttccctgccttggactggggcaccat 189  Q
    ||||| ||||||||||| |||| |||||||| |||||||||||||||||||    
T  37990663 taagtactctttgagcctgaagatcttccctaccttggactggggcaccat 37990613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 209
Target Start/End: Original strand, 40012548 - 40012646
Alignment:
Q  110 ttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcacctcactctaaaattttt 209  Q
    |||||||||||||||||||| | ||||||| ||||||| ||||| |  |||||||||||| | ||||||| || |||| ||  ||||| ||||| |||||    
T  40012548 ttggagggaggtaaatgtaaatccctttgtgagtgctc-ttgagtcataaggtcttccctacgttggactaggacaccgtcctctcacactaaatttttt 40012646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 51066240 - 51066283
Alignment:
Q  161 gtcttccctgccttggactggggcaccatcacctcactctaaaa 204  Q
    ||||||||||||||| |||||||||||||| |||||| ||||||    
T  51066240 gtcttccctgccttgaactggggcaccatcccctcaccctaaaa 51066283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 75 - 214
Target Start/End: Complemental strand, 35163882 - 35163743
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35163882 ccgagagaaccagggttcgagccccactaatgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 35163783  T
Q  175 ggactggggcaccatcacctcactctaaaatttttgtaac 214  Q
    |||||||||||||||| |||||| ||||||||||||||||    
T  35163782 ggactggggcaccatcccctcaccctaaaatttttgtaac 35163743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 20685346 - 20685465
Alignment:
Q  96 ccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcacctc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  20685346 ccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccttc 20685445  T
Q  196 actctaaaatttttgtaacc 215  Q
    || |||||||||||||||||    
T  20685446 accctaaaatttttgtaacc 20685465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 77 - 214
Target Start/End: Complemental strand, 19686957 - 19686820
Alignment:
Q  77 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgg 176  Q
    ||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||| |    
T  19686957 gagagaacctgggttcgagcccctctagtgcctttgtagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaagatctttcctcccttag 19686858  T
Q  177 actggggcaccatcacctcactctaaaatttttgtaac 214  Q
    ||||||||| |||| |||||| ||||||||| ||||||    
T  19686857 actggggcatcatcccctcaccctaaaatttctgtaac 19686820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 75 - 214
Target Start/End: Complemental strand, 2711866 - 2711733
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||| |||||| || |||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  2711866 ccgatagaacctggattcgagccccactagtgcttttggagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctgcctt 2711767  T
Q  175 ggactggggcaccatcacctcactctaaaatttttgtaac 214  Q
    |||      ||||||| |||||| ||||||||||||||||    
T  2711766 gga------caccatcccctcaccctaaaatttttgtaac 2711733  T

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Target: chr6; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 97 - 209
Target Start/End: Original strand, 17948702 - 17948814
Alignment:
Q  97 cccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcacctca 196  Q
    |||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||    
T  17948702 cccgctagtgtctttggagagaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactgggacaccatcccctca 17948801  T
Q  197 ctctaaaattttt 209  Q
    |  ||||||||||    
T  17948802 ccttaaaattttt 17948814  T

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Target: chr6; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 75 - 213
Target Start/End: Complemental strand, 14505655 - 14505519
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||| ||||  |||||||||||||||||| ||||||||||||||||||||| ||||||||||| |  |||||| || ||||| |||||| ||||||    
T  14505655 ccgagagatcccgaattcgagccccgctagtgcttttggagggaggtaaatgtaa-tacctttgtaaatattctttgggcgcgaagatcttccgtgcctt 14505557  T
Q  175 ggactggggcaccatcacctcactctaaaatttttgtaa 213  Q
    |||||||||||||||| |||||| |||||||||||||||    
T  14505556 ggactggggcaccatcccctcac-ctaaaatttttgtaa 14505519  T

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Target: chr6; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 102 - 197
Target Start/End: Original strand, 15070152 - 15070247
Alignment:
Q  102 tagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcacctcac 197  Q
    |||||||||||||||||||||||| ||||||| |||||||||| || |||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  15070152 tagtgcctttggagggaggtaaatataattacatttgtaagtgttcattgagcccgaaggtcttccctgccttagactggggcaccatcccctcac 15070247  T

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Target: chr6; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 14496352 - 14496406
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaa 129  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14496352 ccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaa 14496406  T

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Target: chr6; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 100 - 178
Target Start/End: Original strand, 24336640 - 24336718
Alignment:
Q  100 gctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggac 178  Q
    |||||| ||||||||||||||||||||||| ||| |||||||||| | |||||||| |||| |||||||||||||||||    
T  24336640 gctagtccctttggagggaggtaaatgtaaatacttttgtaagtgttttttgagcctgaagatcttccctgccttggac 24336718  T

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Target: scaffold0021 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 76 - 208
Target Start/End: Complemental strand, 107822 - 107691
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 175  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  107822 cgagagaacccgagttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctaccctgccttg 107723  T
Q  176 gactggggcaccatcacctcactctaaaatttt 208  Q
    ||||||||||||||| |||||| ||||||||||    
T  107722 gactggggcaccatcccctcac-ctaaaatttt 107691  T

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Target: scaffold0691 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 77 - 182
Target Start/End: Complemental strand, 7099 - 6994
Alignment:
Q  77 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgg 176  Q
    ||||||| ||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| ||||| |||||||| ||||||||||||||| ||||||    
T  7099 gagagaatccgggttcgagtcccgctagtgcgtttggagggaagtaaatgtaattacctttgcaagtgttctttgagtccgaaggtcttccctaccttgg 7000  T
Q  177 actggg 182  Q
    ||||||    
T  6999 actggg 6994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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