View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13260_low_36 (Length: 222)
Name: NF13260_low_36
Description: NF13260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13260_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 40644245 - 40644038
Alignment:
| Q |
1 |
gagtttgaccagagcattctcctttggcatattgctacagatctttgtaattcttccgatgataatgagcctcaaaaattaaaccccgctactctccaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40644245 |
gagtttgaccagagcattctcctttggcatattgctacagatctttgtaattcttccgatgataatgagcctcaaaacttaaaccccgctactctccaaa |
40644146 |
T |
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| Q |
101 |
gtcgctatacaagtcaattgttgtcagattatatgatatatcttcttgttatatgtccttttttgttgcccaatggaataggacagatcagatttgaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40644145 |
gtcgctatacaagtcaattgttgtcagattatatgatatatcttcttgttatatgtccttttttgttgcccaatggaataggacagatcagatttgaaga |
40644046 |
T |
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| Q |
201 |
cacatgtg |
208 |
Q |
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|||||||| |
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| T |
40644045 |
cacatgtg |
40644038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 40652915 - 40652708
Alignment:
| Q |
1 |
gagtttgaccagagcattctcctttggcatattgctacagatctttgtaattcttccgatgataatgagcctcaaaaattaaaccccgctactctccaaa |
100 |
Q |
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|
|||||||| ||||| ||||| ||||||||||||||||||||||||||| ||||||| |||||| ||||| ||||||| |||| | | | | || |||| |
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| T |
40652915 |
gagtttgatcagagtattctgctttggcatattgctacagatctttgttattcttcagatgatgatgagtctcaaaacataaatcacattgcccttcaaa |
40652816 |
T |
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| Q |
101 |
gtcgctatacaagtcaattgttgtcagattatatgatatatcttcttgttatatgtccttttttgttgcccaatggaataggacagatcagatttgaaga |
200 |
Q |
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| T |
40652815 |
gtcgtgaaaaaagccaattgttgtcggattatatgatatatcttcttgttgtatgcccttttttgctgcccaatggaataggacagatcagatttgaaga |
40652716 |
T |
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| Q |
201 |
cacatgtg |
208 |
Q |
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||| |||| |
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| T |
40652715 |
cacgtgtg |
40652708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 40642750 - 40642718
Alignment:
| Q |
176 |
gaataggacagatcagatttgaagacacatgtg |
208 |
Q |
| |
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||||| ||||||||||||||||||||||||||| |
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| T |
40642750 |
gaatatgacagatcagatttgaagacacatgtg |
40642718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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