View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13260_low_39 (Length: 215)
Name: NF13260_low_39
Description: NF13260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13260_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 60 - 199
Target Start/End: Complemental strand, 9691429 - 9691286
Alignment:
| Q |
60 |
tgaacttgaaggaagaataataagtgatggaattggagctagggttacaaagttaggaggttaatcaagttttcatcatca-ttactct---ttctcaaa |
155 |
Q |
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| T |
9691429 |
tgaacttgaaggaagaataataagagatggaattggagctagggttacaaagttaggaggttaatcaagttttcatcatcatttactctttcttctcaaa |
9691330 |
T |
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| Q |
156 |
tgcctcttttcaattgacaaggtgagttcattaataggcttcat |
199 |
Q |
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| T |
9691329 |
ctcctcttttcaattgacaaggtgagttcattaataggattcat |
9691286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 64
Target Start/End: Complemental strand, 9691588 - 9691553
Alignment:
| Q |
29 |
tcagaaattccatgttgcctcttctcctctctgaac |
64 |
Q |
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| T |
9691588 |
tcagaaattctatgttgcctcttctcctctctgaac |
9691553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 65 - 196
Target Start/End: Original strand, 1933460 - 1933595
Alignment:
| Q |
65 |
ttgaaggaagaataataa-gtgatggaattggagctagggttacaaagttaggaggttaatcaagttttcatcatcat-tactct---ttctcaaatgcc |
159 |
Q |
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|||||||||||||||||| | |||| |||||||||||||||||||| |||| |||||||||| ||||||||||||||| ||| || |||||||| || |
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| T |
1933460 |
ttgaaggaagaataataaagagatgaaattggagctagggttacaatgttaagaggttaatctagttttcatcatcatctaccctttcttctcaaactcc |
1933559 |
T |
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| Q |
160 |
tcttttcaattgacaaggtgagttcattaataggctt |
196 |
Q |
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| T |
1933560 |
tc-tttcaattgacgaggtgagttctttaataggctt |
1933595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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