View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13260_low_4 (Length: 616)
Name: NF13260_low_4
Description: NF13260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13260_low_4 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 514; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 19 - 616
Target Start/End: Original strand, 12976502 - 12977099
Alignment:
| Q |
19 |
tgatgctagtagtaaagattctaataatgtttcttcctttggtaatagaaatagatcatttggtagaaacaatgttaatagagataaagggtcatctcaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||| ||||||||| |
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| T |
12976502 |
tgatgctagtagtaaagattctaataatgtttcttcctttggtaatagaaatagatcatttagtagaaacaatgttagtaaagataaagattcatctcaa |
12976601 |
T |
|
| Q |
119 |
gttggtcattttatatcactttcttggagtgtatcaagaaattggtcagctgcaaaacaactacaagcaatagggaccaatctttgttttcctaagagta |
218 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
12976602 |
tttggtcattttagatcactttcttggagtgtatcaaggaattggtcagctgcaaaacaactacaagcactagggaccaatctttgttttcctaagagta |
12976701 |
T |
|
| Q |
219 |
atgaacttgttgctacaaatggtcttgcattggctatttatacaatgagttcaattttattgtttacaatgtggtcacttgtggctgcaattccttgtca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12976702 |
atgaacttgttgctacaaatggtcttgcattgactatttatacaatgagttcaattttgttgtttacaatgtggtcacttgtggctgcaattccttgtca |
12976801 |
T |
|
| Q |
319 |
agataggggattacatctaaacttttcggttccacggcagcttcaatgggcggctcaaatgacgtcattgcacgagctgattttggagaagtcgaagaag |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
12976802 |
agataggggattacatctaaacttttcggttctacggcagcttcaatgggcggctccaatgatgtcattgcacgagcggattttggagaagtcgaagaag |
12976901 |
T |
|
| Q |
419 |
agggattggaagaattgttgcggacttttgaaggagattctggagattgagaagtgtgttagggggatgtatgaattggctgattctttggaatttcctt |
518 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
12976902 |
agggagaggaagaattgttgcggacttttgaaggagattcaggagattgagaagtgtgctagggggatgaatgaattggctgattctttggaatttcctt |
12977001 |
T |
|
| Q |
519 |
tgagtgaagagaaagaagaggaagttagggttaaagttgaagatgtggtgattgtttgtgaaagtttgaaagatggattggatcctttggaaatacaa |
616 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
12977002 |
tgagtgaagagaaagaagaggaagttagggttaaagttgaagatgtggtgattgtttgtgaaagttttaaagatggattggatcctttggaaatacaa |
12977099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 19 - 616
Target Start/End: Original strand, 13008901 - 13009498
Alignment:
| Q |
19 |
tgatgctagtagtaaagattctaataatgtttcttcctttggtaatagaaatagatcatttggtagaaacaatgttaatagagataaagggtcatctcaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||| ||| |
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| T |
13008901 |
tgatgctagtagtaaagattctaataatgtttcttcctttggtaatagaaatagatcatttggtagaaacattgttagtaaagataaagattcatcacaa |
13009000 |
T |
|
| Q |
119 |
gttggtcattttatatcactttcttggagtgtatcaagaaattggtcagctgcaaaacaactacaagcaatagggaccaatctttgttttcctaagagta |
218 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
13009001 |
gttggtcattttagatcactttcttggagtgtatcaaggaattggtcagctgcaaaacaactacaagcactagggaccaatctttgttttccaaagagta |
13009100 |
T |
|
| Q |
219 |
atgaacttgttgctacaaatggtcttgcattggctatttatacaatgagttcaattttattgtttacaatgtggtcacttgtggctgcaattccttgtca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13009101 |
atgaacttgttgctacaaatggtcttgcattggctatttatacaatgagttcaattttgttgtttacaatgtggtcacttgtggctgcaattccttgtca |
13009200 |
T |
|
| Q |
319 |
agataggggattacatctaaacttttcggttccacggcagcttcaatgggcggctcaaatgacgtcattgcacgagctgattttggagaagtcgaagaag |
418 |
Q |
| |
|
||| ||||| |||||||| ||||||||||||||||||||||||| ||||||| ||| ||||| |||||||||||||| |||||||||||||||||||||| |
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|
| T |
13009201 |
agaaaggggcttacatctcaacttttcggttccacggcagcttccatgggcgtctccaatgatgtcattgcacgagcggattttggagaagtcgaagaag |
13009300 |
T |
|
| Q |
419 |
agggattggaagaattgttgcggacttttgaaggagattctggagattgagaagtgtgttagggggatgtatgaattggctgattctttggaatttcctt |
518 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
13009301 |
agggagaggaagaattgttgcggacttttgaaggagattcaggagattgagaagtgtgctagggggatgaatgaattggctgattctttggaatttcctt |
13009400 |
T |
|
| Q |
519 |
tgagtgaagagaaagaagaggaagttagggttaaagttgaagatgtggtgattgtttgtgaaagtttgaaagatggattggatcctttggaaatacaa |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
13009401 |
tgagtgaagagaaagaagaggaagttagggttaatgttgaagatgtggtgaatgtttgtgaaggtttgaaagatggattggatcctttggaaagacaa |
13009498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 19 - 616
Target Start/End: Original strand, 13012460 - 13013056
Alignment:
| Q |
19 |
tgatgctagtagtaaagattctaataatgtttcttcctttggtaatagaaatagatcatttggtagaaacaatgttaatagagataaagggtcatctcaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
13012460 |
tgatgctagtagtaaagattctaataatgtttcttcctttggtaatagaaatagatcatttggtagaaacaatgttaatggagataaagggtcatctcaa |
13012559 |
T |
|
| Q |
119 |
gttggtcattttatatcactttcttggagtgtatcaagaaattggtcagctgcaaaacaactacaagcaatagggaccaatctttgttttcctaagagta |
218 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
13012560 |
gttgg-cattttagatcactttcttggagtgtatcaaggaattggtcagctgcaaaacaactacaagcaatagggacccatctttgttttcctaagagta |
13012658 |
T |
|
| Q |
219 |
atgaacttgttgctacaaatggtcttgcattggctatttatacaatgagttcaattttattgtttacaatgtggtcacttgtggctgcaattccttgtca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
13012659 |
atgaacttgttgctacaaatggtcttgcatcgactatttatacaatgagttcaattttgttgtttacaatgtggtcacttgtggctgcatttccttgtca |
13012758 |
T |
|
| Q |
319 |
agataggggattacatctaaacttttcggttccacggcagcttcaatgggcggctcaaatgacgtcattgcacgagctgattttggagaagtcgaagaag |
418 |
Q |
| |
|
|||||||| ||| ||||||| ||||||||||||||||| |||||||||||||||| ||| |||||||||| || ||| |||| ||||||||||||| |
|
|
| T |
13012759 |
agatagggaattgaatctaaatttttcggttccacggcaacttcaatgggcggctccggtgatatcattgcacgtgcggatgttggggaagtcgaagaag |
13012858 |
T |
|
| Q |
419 |
agggattggaagaattgttgcggacttttgaaggagattctggagattgagaagtgtgttagggggatgtatgaattggctgattctttggaatttcctt |
518 |
Q |
| |
|
||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||| |
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|
| T |
13012859 |
agggagatgaagagttgttgcggacttttgagggagattcaggagattgagaagtgtgctagggggatgaatgaattggctgattctgtggaatttcctt |
13012958 |
T |
|
| Q |
519 |
tgagtgaagagaaagaagaggaagttagggttaaagttgaagatgtggtgattgtttgtgaaagtttgaaagatggattggatcctttggaaatacaa |
616 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
13012959 |
tgagtgaagagaaagaagaggaacttagggttaaagttgcagatgtggtgattgtttgtgaaagtttgaaagatggattggatcctttcgtaatacaa |
13013056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 19 - 616
Target Start/End: Original strand, 13031257 - 13031856
Alignment:
| Q |
19 |
tgatgctagtagtaaagattctaataatgtttcttcctttggtaatagaaatagatcatttggtagaaacaatgttaatagagataaagggtcatctcaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13031257 |
tgatgctagtagtaaagattctaataatgtttcttcctttggtaataaaaatagatcatttggtagaaacaatgttaatagagataaagggtcatctcaa |
13031356 |
T |
|
| Q |
119 |
gttggtcattttatatcactttcttggagtgtatcaagaaattggtcagctgcaaaacaactacaagcaatagggaccaatctttgttttcctaagagta |
218 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13031357 |
gttggtcattttagatcactttcaaggagtgtatcaagaaattggtcagctg-aaaacaactacaagcaatagggaccaatctttgttttcctaagagta |
13031455 |
T |
|
| Q |
219 |
atgaacttgttgctacaaatggtcttgcattggctatttatacaatgagttcaattttattgtttacaatgtggtcacttgtggctgcaattccttgtca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13031456 |
atgaacttgttgctacaaatggtcttgcattggctatttatacaatgagttcaattttgttgtttacaatgtggtcacttgtggctgcaattccttgtca |
13031555 |
T |
|
| Q |
319 |
agataggggattacatctaaacttttcggttccacggcag---cttcaatgggcggctcaaatgacgtcattgcacgagctgattttggagaagtcgaag |
415 |
Q |
| |
|
||||||||||||| || |||| |||||||||||||||||| |||||||||||||||| ||| | |||||||| || ||| ||| | |||||||| |
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| T |
13031556 |
agataggggattaaatataaatttttcggttccacggcagcttcttcaatgggcggctccggtgatgcaattgcacgtgcggatgttgttggagtcgaag |
13031655 |
T |
|
| Q |
416 |
aagagggattggaagaattgttgcggacttttgaaggagattctggagattgagaagtgtgttagggggatgtatgaattggctgattctttggaatttc |
515 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||| |||| |
|
|
| T |
13031656 |
aagagggagatgaagagttgttgcggacttttgaaggagattctggagattgagaagtgtgctagggggatgaatgaactggctgattctttgcggtttc |
13031755 |
T |
|
| Q |
516 |
ctttgagtgaagagaaagaagaggaagttagggttaaagttgaagatgtggtgattgtttgtgaaagtttgaaagatggattggatcctttggaaataca |
615 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
13031756 |
ctttgagtgaagagaaagaagaggaagttagggttaaagttgaagatgtggtgaaggtttgtgaaggtttgaaagatggattggatcctttggaaagaca |
13031855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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