View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13260_low_5 (Length: 600)
Name: NF13260_low_5
Description: NF13260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13260_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 551; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 10 - 584
Target Start/End: Complemental strand, 49511061 - 49510487
Alignment:
| Q |
10 |
attattctttaccaagatgcacattttctagatggttctgttccgtatattccattggatggagcagaacggtatgtgccgggaaaatgttgggaagata |
109 |
Q |
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| T |
49511061 |
attactctttaccaagatgcacattttctagatggttctgttccgtatattccattggatggagcagaacggtatgtgccgggaaaatgttgggaagata |
49510962 |
T |
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| Q |
110 |
cttgcaatgcaattaatgatgctaagcattttatttgcataactggttggtctgtttacacggaaataaccttgattagagatccaaacgagtcaacaag |
209 |
Q |
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| T |
49510961 |
cttgcaatgcaattaatgatgctaagcattttatttgcataactggttggtctgtttacacggaaataaccttgattagagatccaaacgagtcaacaag |
49510862 |
T |
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| Q |
210 |
agcaaccatcactcttggggagcttcttaagaagaaagccaatgaaggtgttaatgttcttatgcttgtttgggatgacggaacttctgttcctgacttt |
309 |
Q |
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| T |
49510861 |
agcaaccatcactcttggggagcttcttaagaagaaagccaatgaaggtgttaatgttcttatgcttgtttgggatgacagaacttctgttcctgacttt |
49510762 |
T |
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| Q |
310 |
atgaaagatggcttgatggcaactcatgatcaagaaacagcagagtattttagaaacacaaatgtccattgtgttttgtgcccgcgtaaccctggtgatg |
409 |
Q |
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| T |
49510761 |
aagaaagatggcttgatggcaactcatgatcaagaaacagcagagtattttagaaacacaaatgtccattgtgttttgtgcccgcgtaaacctggtgatg |
49510662 |
T |
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| Q |
410 |
gaagaagtatagttcaaggttttgaaatttcaactatgttcactcatcaccagaagactataattgttgacagcaaagtcgctagttctgcacaatggga |
509 |
Q |
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| T |
49510661 |
gaagaagtatagttcaaggttttgaaattttaactatgttcactcatcaccagaagactataattgttgacagcaaagtcgctagttttgcacaatggga |
49510562 |
T |
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| Q |
510 |
gaagagaacaatcacaagttttgttggtggtattgatctttgtgatgggagatatgataccatggaacatccttt |
584 |
Q |
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| T |
49510561 |
gaagagaacaatcacaagttttgttggtggtattgatctttgtgatgggagatatgataccatggaacatccttt |
49510487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 82 - 479
Target Start/End: Complemental strand, 49521933 - 49521536
Alignment:
| Q |
82 |
tatgtgccgggaaaatgttgggaagatacttgcaatgcaattaatgatgctaagcattttatttgcataactggttggtctgtttacacggaaataacct |
181 |
Q |
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| T |
49521933 |
tatgtacctggaagatgttgggaagatatttacaatgccattatgaatgctaaagtctttatttacataactggttggtctgttcatacagaaataacct |
49521834 |
T |
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| Q |
182 |
tgattagagatccaaacgagtcaacaagagcaaccatcactcttggggagcttcttaagaagaaagccaatgaaggtgttaatgttcttatgcttgtttg |
281 |
Q |
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| T |
49521833 |
tgattagggacccaaacaagacaacagaaagtagtatcaccctaggagaaatgctcaagaaaaaagccaacgaaggtgttaatgttcttgtgcttgtttg |
49521734 |
T |
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| Q |
282 |
ggatgacggaacttctgttcctgactttatgaaagatggcttgatggcaactcatgatcaagaaacagcagagtattttagaaacacaaatgtccattgt |
381 |
Q |
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| T |
49521733 |
ggatgacagaacctctgttccggcttttaagaaagacggtttgatgggaacacatgaccaagaaactgcagagtattttaagaacacaaaggtacattgt |
49521634 |
T |
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| Q |
382 |
gttttgtgcccgcgtaaccctggtgatggaagaagtatagttcaaggttttgaaatttcaactatgttcactcatcaccagaagactataattgttga |
479 |
Q |
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| T |
49521633 |
gttttatgtccgcgtaaccctgatggtggaaaaagcatagttcaaggttttgaaacttcaactatgttcactcatcaccaaaagactatagttgttga |
49521536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 538 - 584
Target Start/End: Complemental strand, 49521483 - 49521437
Alignment:
| Q |
538 |
ggtattgatctttgtgatgggagatatgataccatggaacatccttt |
584 |
Q |
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| T |
49521483 |
ggtattgatctttgcgatggaagatatgatacaatggaacatccttt |
49521437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 216 - 347
Target Start/End: Original strand, 44661911 - 44662042
Alignment:
| Q |
216 |
catcactcttggggagcttcttaagaagaaagccaatgaaggtgttaatgttcttatgcttgtttgggatgacggaacttctgttcctgactttatgaaa |
315 |
Q |
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| T |
44661911 |
catcacacttggtgagcttctcaagaaaaaagcacaagaaggtgttagggtattaatgcttgtttgggatgatagaacgtcggttcctctgttaaaaaaa |
44662010 |
T |
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| Q |
316 |
gatggcttgatggcaactcatgatcaagaaac |
347 |
Q |
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| T |
44662011 |
gatgggttgatggctactcatgatcaagaaac |
44662042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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