View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13260_low_7 (Length: 511)

Name: NF13260_low_7
Description: NF13260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13260_low_7
NF13260_low_7
[»] chr8 (9 HSPs)
chr8 (56-473)||(27847885-27848301)
chr8 (323-400)||(27857985-27858062)
chr8 (291-400)||(27871996-27872105)
chr8 (323-400)||(27884265-27884342)
chr8 (323-400)||(27885545-27885622)
chr8 (323-400)||(27967458-27967535)
chr8 (323-400)||(27979521-27979598)
chr8 (323-400)||(28024444-28024521)
chr8 (323-400)||(28036790-28036867)


Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 56 - 473
Target Start/End: Original strand, 27847885 - 27848301
Alignment:
Q  56 tctatcatgcacgttaaaatcatactatgttgcgctactatcggtacaaattcttcggtgttctatatcaacaagtttttatattttcatttcaattagt 155  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  27847885 tctatcatgcacgttaaaatcacactatgttgcgctactatcggtacaaattcttcggtgttctatatcaacaagtttttctattttcattttaattagt 27847984  T
Q  156 cttttaatagtatcattctatcttgtattaattatcacatctaatatgtgggacagcacgtcacaaaatgcgcatttgcactacttcatggcctagtttc 255  Q
    |||| |||||||||||||||||||||||||||||||   ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27847985 cttt-aatagtatcattctatcttgtattaattatccattctaatatgtgggacggcacgtcacaaaatgcgcatttgcactacttcatggcctagtttc 27848083  T
Q  256 attcctataaataccagtcttatgaattcttaaacctcagttgtgtaggatttcaacaattttacaaatggcaacttcgaaagttctcagtatcgttctc 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27848084 attcctataaataccagtcttatgaattcttaaacctcagttgtgtaggatttcaacaattttacaaatggcaacttcgaaagttcttagtatcgttctc 27848183  T
Q  356 tttgtgttgttgggcttaagcataagttctgctgccagaaaactcattgttggggatgtaggtggaggatatggatatgccggaccaggcgaaggaggtg 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27848184 tttgtgttgttgggcttaagcataagttctgctgccagaaaactcattgttggggatgtaggtggaggatatggatatgccggaccaggcgaaggaggtg 27848283  T
Q  456 atggatatggtgtttctc 473  Q
    ||||||||||||||||||    
T  27848284 atggatatggtgtttctc 27848301  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 400
Target Start/End: Original strand, 27857985 - 27858062
Alignment:
Q  323 atggcaacttcgaaagttctcagtatcgttctctttgtgttgttgggcttaagcataagttctgctgccagaaaactc 400  Q
    |||||||||||||||||||| || ||   |||||||||||||||||| ||||||||  |||||||| | |||||||||    
T  27857985 atggcaacttcgaaagttctaagcatttctctctttgtgttgttgggtttaagcatgtgttctgctactagaaaactc 27858062  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 400
Target Start/End: Original strand, 27871996 - 27872105
Alignment:
Q  291 ctcagttgtgtaggatttcaacaattttacaaatggcaacttcgaaagttctcagtatcgttctctttgtgttgttgggcttaagcataagttctgctgc 390  Q
    |||||||||||| ||||  |||||  || || |||||||||||||||||||| || || | | |||||||| ||||||| ||||||||  |||||||| |    
T  27871996 ctcagttgtgtaagattcaaacaaaatttcatatggcaacttcgaaagttctaagcattgctatctttgtgctgttgggtttaagcatgtgttctgctac 27872095  T
Q  391 cagaaaactc 400  Q
     |||||||||    
T  27872096 tagaaaactc 27872105  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 400
Target Start/End: Original strand, 27884265 - 27884342
Alignment:
Q  323 atggcaacttcgaaagttctcagtatcgttctctttgtgttgttgggcttaagcataagttctgctgccagaaaactc 400  Q
    ||||||||||| |||||||| || || | |||||||||| ||||||| ||||||||  |||||||| | |||||||||    
T  27884265 atggcaacttcaaaagttctaagcattgctctctttgtgctgttgggtttaagcatgtgttctgctactagaaaactc 27884342  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 400
Target Start/End: Original strand, 27885545 - 27885622
Alignment:
Q  323 atggcaacttcgaaagttctcagtatcgttctctttgtgttgttgggcttaagcataagttctgctgccagaaaactc 400  Q
    ||||||||||| |||||||| || || | |||||||||| ||||||| ||||||||  |||||||| | |||||||||    
T  27885545 atggcaacttcaaaagttctaagcattgctctctttgtgctgttgggtttaagcatgtgttctgctactagaaaactc 27885622  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 400
Target Start/End: Original strand, 27967458 - 27967535
Alignment:
Q  323 atggcaacttcgaaagttctcagtatcgttctctttgtgttgttgggcttaagcataagttctgctgccagaaaactc 400  Q
    ||||||||||| |||||||| || || | |||||||||| ||||||| ||||||||  |||||||| | |||||||||    
T  27967458 atggcaacttcaaaagttctaagcattgctctctttgtgctgttgggtttaagcatgtgttctgctactagaaaactc 27967535  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 400
Target Start/End: Original strand, 27979521 - 27979598
Alignment:
Q  323 atggcaacttcgaaagttctcagtatcgttctctttgtgttgttgggcttaagcataagttctgctgccagaaaactc 400  Q
    ||||||||||| |||||||| || || | |||||||||| ||||||| ||||||||  |||||||| | |||||||||    
T  27979521 atggcaacttcaaaagttctaagcattgctctctttgtgctgttgggtttaagcatgtgttctgctactagaaaactc 27979598  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 400
Target Start/End: Original strand, 28024444 - 28024521
Alignment:
Q  323 atggcaacttcgaaagttctcagtatcgttctctttgtgttgttgggcttaagcataagttctgctgccagaaaactc 400  Q
    ||||||||||| |||||||| || || | |||||||||| ||||||| ||||||||  |||||||| | |||||||||    
T  28024444 atggcaacttcaaaagttctaagcattgctctctttgtgctgttgggtttaagcatgtgttctgctactagaaaactc 28024521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 400
Target Start/End: Original strand, 28036790 - 28036867
Alignment:
Q  323 atggcaacttcgaaagttctcagtatcgttctctttgtgttgttgggcttaagcataagttctgctgccagaaaactc 400  Q
    ||||||||||| |||||||| || || | |||||||||| ||||||| ||||||||  |||||||| | |||||||||    
T  28036790 atggcaacttcaaaagttctaagcattgctctctttgtgctgttgggtttaagcatgtgttctgctactagaaaactc 28036867  T

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