View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13260_low_9 (Length: 455)
Name: NF13260_low_9
Description: NF13260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13260_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 35782499 - 35782936
Alignment:
| Q |
1 |
attttgtgggatctagctgccagtaaaacacatgcggaactcatggtactactctatttttgttgggttttaatttttatacattgacacttgacaatgt |
100 |
Q |
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| T |
35782499 |
attttgtgggatctagctgccagtaaaacacatgcggaactcatggtactactctatttttgttgggttttaatttttatacattgacacttgacaatgt |
35782598 |
T |
|
| Q |
101 |
aaaacatttttacacacgcatccaatcaaactgcgctatgtagatacttgtcataagaaaattgctctatgatgtgatttgattggatgcgtttataaag |
200 |
Q |
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| T |
35782599 |
aaaacatttttacacacgcatccaatcaaactgcgctatgtagatacttgtcataagaaaattgctctatgatgtgatttgattggatgcgtttataaag |
35782698 |
T |
|
| Q |
201 |
tagttttacagcatcagtgtttagaaattaatgtcatttttgtatagtgtttagttgagttattttgtatgttcacagtgagaagtgttagaattgattg |
300 |
Q |
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| T |
35782699 |
tagttttacagcatcagtttttagaaattaatgtcatttttgtatagtgtttagttgagttattttgtatgttcacagtgagaagtgttagaattgattg |
35782798 |
T |
|
| Q |
301 |
tatctctaaaacgtgattgtaggaaaattaacgagtcagttagtttctccatcaaatttcggtttgagtggaagtgattaaaaaatatcttttgcgttta |
400 |
Q |
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| T |
35782799 |
tatctctaaaacgtgattgtaggaaaattaacgagtcagttaatttctccatcaaatttcggtttgagtggaagtgattaaaaaatatcttttgcgtata |
35782898 |
T |
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| Q |
401 |
gttgaagaatttaaattgagttttacccaattcctttt |
438 |
Q |
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| T |
35782899 |
gttgaagaatttaaattgagttttacccaattcctttt |
35782936 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 130
Target Start/End: Complemental strand, 19711257 - 19711225
Alignment:
| Q |
98 |
tgtaaaacatttttacacacgcatccaatcaaa |
130 |
Q |
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| T |
19711257 |
tgtaaaacatttttagacacgcatccaatcaaa |
19711225 |
T |
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