View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13261_high_1 (Length: 860)
Name: NF13261_high_1
Description: NF13261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13261_high_1 |
 | |
|
| [»] scaffold0141 (2 HSPs) |
| | |
|
| [»] scaffold0638 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0141 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 240 - 845
Target Start/End: Original strand, 7625 - 8245
Alignment:
| Q |
240 |
attgtgttacaatagtttaggctagttaagtttcacacagttacttgctacacaagtaacaaatgcatctcaagctaattatcccataacaagtacaaaa |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7625 |
attgtgttacaatagtttaggctagttaagtttcacacagttacttgctacacaagtaacaaatgcatctcaagctaattatcccttaacaagtacaaaa |
7724 |
T |
|
| Q |
340 |
ctccatatttcctatttcaactatctgtattattaaaactttctaataaccttgataattttaaacatcaatatgaagtcctgc-aaaaatgctcgctgg |
438 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| | |
|
|
| T |
7725 |
ctccagatttcctatttcaactatctgtattattaaaactttctaataaccttgataattttaaacatcagtatgaagtcctgcaaaaaatgctcgc--g |
7822 |
T |
|
| Q |
439 |
catcagcacattaaagccttgtcctctgcatatctgctacaccaatattaaaaaccaaacagaagctttgaacatgtgggagacgaagatgagaaagaag |
538 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7823 |
catcggcacattaaagccttgtcctctgcgtatctgctacaccaatattaaaaaccaatcagaagctttgaacatgtgggagacgaagatgagaaagaag |
7922 |
T |
|
| Q |
539 |
caaattttaaaaatttcatctatcccacaaacaagagaacaacatctcttcaattcaacaccaaaatgatgaagtggcatgtttggtctctcaaa-gggg |
637 |
Q |
| |
|
||||||| ||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7923 |
caaatttaaaaaatttcatctatcccacagac-agagaacagcatctcttcaattcaacaccaaaatgatgaagtggcatgtttggtctctcaaaggggg |
8021 |
T |
|
| Q |
638 |
taaagtggaaaacataaatattctgcagaaggaaaaactgcttgtttaa---------------aaggcatgcataaaaggcatcactgtaaattaagaa |
722 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| || | | ||| |||||||||||||||||||||||| |
|
|
| T |
8022 |
taaagtggaaaacataaatgttctgcagaaggaaaaactgcttgtttaaaatttgattttttttaacggaaacatcaaaggcatcactgtaaattaagaa |
8121 |
T |
|
| Q |
723 |
tgagaaaaaataag------tataaaacaataaagtaggcgggtgagtgggaaattttgatgtagcgaagcgaacacgtgtgcaatatggattaactctc |
816 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
8122 |
tgagaaaaaataagtactcctataaaacaatcaagtaggcaggtgagtgggaaattttgat-----gaagcgaacacgtgtgcaaaatggattaactctc |
8216 |
T |
|
| Q |
817 |
tcataaagtatcagtctatcctattagat |
845 |
Q |
| |
|
||||||||||||||||||||||| ||||| |
|
|
| T |
8217 |
tcataaagtatcagtctatcctaatagat |
8245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 7401 - 7579
Alignment:
| Q |
16 |
atgattgtgatattaaactattttcagtattgttaaaggtaatctcaaactccatgaaagcaaagattaagcttgcaatgtgcatagctttgaagaaaac |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7401 |
atgattgtgatattaaactattttcagtattgttaaaggtaatctcaaactccattaaagcaaagattaagcttgcaatgtgcatagctttgaagaaaac |
7500 |
T |
|
| Q |
116 |
aaaggaagtgagaaaaaggaattttattattctcaaaatctaagaattacagtgaagcactatagctttacatagagtg |
194 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7501 |
aaaggaagtgagaaaaaggcattttattattctcaaaatctaagaattacagtgaagcactatagctttacatagagtg |
7579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 240 - 655
Target Start/End: Complemental strand, 8429923 - 8429508
Alignment:
| Q |
240 |
attgtgttacaatagtttaggctagttaagtttcacacagttacttgctacacaagtaacaaatgcatctcaagctaattatcccataacaagtacaaaa |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8429923 |
attgtgttacaatagtttaggctagttaagtttcacacagttacttgctacacaagtaacaaatgcatctcaagctaattatcccataacaagtacaaaa |
8429824 |
T |
|
| Q |
340 |
ctccatatttcctatttcaactatctgtattattaaaactttctaataaccttgataattttaaacatcaatatgaagtcctgcaaaaatgctcgctggc |
439 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8429823 |
ctccagatttcctatttcaactatctgtattattaaaactttctaataaccttgataattttaaacatcaatatgaagtcctgcaaaaatgctcgctggc |
8429724 |
T |
|
| Q |
440 |
atcagcacattaaagccttgtcctctgcatatctgctacaccaatattaaaaaccaaacagaagctttgaacatgtgggagacgaagatgagaaagaagc |
539 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8429723 |
atcggcacattaaagccttgtcctctgcatatctgctacaccaatattaaaaaccaaacagaagctttgaacatgtgggagacgaagatgagaaagaagc |
8429624 |
T |
|
| Q |
540 |
aaattttaaaaatttcatctatcccacaaacaagagaacaacatctcttcaattcaacaccaaaatgatgaagtggcatgtttggtctctcaaaggggta |
639 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8429623 |
aaattttaaaaatttcatctatcccacaaacaagagaacagcatctcttcaattcaacaccaaaatgatgaagtggcatgcttggtctctcaaaggggta |
8429524 |
T |
|
| Q |
640 |
aagtggaaaacataaa |
655 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
8429523 |
aagtggaaaacataaa |
8429508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 240 - 655
Target Start/End: Original strand, 8449488 - 8449908
Alignment:
| Q |
240 |
attgtgttacaatagtttaggctagttaagtttcacacagttacttgctacacaagtaacaaatgcatctcaagctaattatcccataacaagtacaaaa |
339 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8449488 |
attgtgttacaatagttctggctagttaagtttcacacagttacttgctacacaagtaacaaatgcatctcaagctaattatcccttaacaagtacaaaa |
8449587 |
T |
|
| Q |
340 |
ctccatatttcctatttcaactatctgtattattaaaactttctaataaccttgataattttaaacatcaatatgaagtcctgcaaaaatgctcgctggc |
439 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8449588 |
ctccagatttcctatttcaactatctgtattattaaaactttctaataaccttgataattttaaacatcaatatgaagtcctgcaaaaatgctcgctggc |
8449687 |
T |
|
| Q |
440 |
atcagcac------attaaagccttgtcctctgcatatctgctacaccaatattaaaaaccaaacagaagctttgaacatgtgggagacgaagatgagaa |
533 |
Q |
| |
|
| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8449688 |
accggcaccggcacattaaagccttgtcctctgcatatctgctacaccaatattaaaaaccaaacagaagctttgaacatgtgggagacgaagatgagaa |
8449787 |
T |
|
| Q |
534 |
agaagcaaattttaaaaatttcatctatcccacaaacaagagaacaacatctcttcaattcaacaccaaaatgatgaagtggcatgtttggtctctcaaa |
633 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8449788 |
agaagcaaattttaaaaattttatctatcccacaaac-agagaacagcatctcttcaattcaacaccaaaatgatgaagtggcatgtttggtctctcaaa |
8449886 |
T |
|
| Q |
634 |
ggggtaaagtggaaaacataaa |
655 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
8449887 |
ggggtaaagtggaaaacataaa |
8449908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 8430147 - 8429969
Alignment:
| Q |
16 |
atgattgtgatattaaactattttcagtattgttaaaggtaatctcaaactccatgaaagcaaagattaagcttgcaatgtgcatagctttgaagaaaac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8430147 |
atgattgtgatattaaactattttcagtattgttaaaggtaatctcaaactccatgaaagcaaagattaagcttgcaatgtgcatagctttgaagaaaac |
8430048 |
T |
|
| Q |
116 |
aaaggaagtgagaaaaaggaattttattattctcaaaatctaagaattacagtgaagcactatagctttacatagagtg |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8430047 |
aaaggaagtgagaaaaaggaattttattattctcaaaatctaagaattacagtgaagcactatagctttacatagagtg |
8429969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 175; E-Value: 9e-94
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 8449264 - 8449442
Alignment:
| Q |
16 |
atgattgtgatattaaactattttcagtattgttaaaggtaatctcaaactccatgaaagcaaagattaagcttgcaatgtgcatagctttgaagaaaac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8449264 |
atgattgtgatattaaactattttcagtattgttaaaggtaatctcaaactccatgaaagcaaagattaagcttgcaatgtgcatagctttgaagaaaac |
8449363 |
T |
|
| Q |
116 |
aaaggaagtgagaaaaaggaattttattattctcaaaatctaagaattacagtgaagcactatagctttacatagagtg |
194 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8449364 |
aaaggaagtgagaaaaaggcattttattattctcaaaatctaagaattacagtgaagcactatagctttacatagagtg |
8449442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 695 - 844
Target Start/End: Complemental strand, 8429513 - 8429364
Alignment:
| Q |
695 |
cataaaaggcatcactgtaaattaagaatgagaaaaaataagtataaaacaataaagtaggcgggtgagtgggaaattttgatgtagcgaagcgaacacg |
794 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
8429513 |
cataaaaggcatcagtgtaaattaagaatgagaaaaaataagtataaaacaatcaagtaggcaggtgagtgggaaattttgatgtagcgaagcgaacaag |
8429414 |
T |
|
| Q |
795 |
tgtgcaatatggattaactctctcataaagtatcagtctatcctattaga |
844 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8429413 |
tgtgcaatatggattaactctctcataaagtatcagtctatcctattaga |
8429364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 695 - 844
Target Start/End: Original strand, 8449903 - 8450051
Alignment:
| Q |
695 |
cataaaaggcatcactgtaaattaagaatgagaaaaaataagtataaaacaataaagtaggcgggtgagtgggaaattttgatgtagcgaagcgaacacg |
794 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
8449903 |
cataaaaggcatcactgtaaattaagaatgagaaaa-ataagtataaaacaatcaagtaggcaggtgagtgggaaattttgatgtagcgaagcgaacaag |
8450001 |
T |
|
| Q |
795 |
tgtgcaatatggattaactctctcataaagtatcagtctatcctattaga |
844 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8450002 |
tgtgcaatatggattaactctctcataaagtatcagtctatcctattaga |
8450051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 25973850 - 25973954
Alignment:
| Q |
43 |
tattgttaa-aggtaatctcaaactccatgaaagcaa-agattaagcttgcaatgtgcatagctttgaagaaaacaaaggaagtgagaaaaaggaatttt |
140 |
Q |
| |
|
||||||||| ||| |||||||| | |||||||||||| | | ||||||||||||||||| |||| ||||||| | |||| || |||||||| | || ||| |
|
|
| T |
25973850 |
tattgttaagaggcaatctcaatccccatgaaagcaagaaaataagcttgcaatgtgcaaagctatgaagaaga-aaagaaaatgagaaaaggaaaattt |
25973948 |
T |
|
| Q |
141 |
attatt |
146 |
Q |
| |
|
|||||| |
|
|
| T |
25973949 |
attatt |
25973954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 1e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 52 - 194
Target Start/End: Original strand, 4238600 - 4238742
Alignment:
| Q |
52 |
aggtaatctcaaactccatgaaagcaaagattaagcttgcaatgtgcatagctttgaagaaaacaaaggaagtgagaaaaaggaattttattattctcaa |
151 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4238600 |
aggtaatctcaaactccatgaaagcaaaggttaagcttgcaatgtgcatagatttgaagaaaacaaaggaagtgagaaaaaggaattttattattctcaa |
4238699 |
T |
|
| Q |
152 |
aatctaagaattacagtgaagcactatagctttacatagagtg |
194 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||| |||||||| |
|
|
| T |
4238700 |
aatctaagtattacaatgaagcactatagctttatatagagtg |
4238742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 245 - 323
Target Start/End: Original strand, 4238913 - 4238991
Alignment:
| Q |
245 |
gttacaatagtttaggctagttaagtttcacacagttacttgctacacaagtaacaaatgcatctcaagctaattatcc |
323 |
Q |
| |
|
||||||| ||||| ||||||| ||||||||| |||| |||||||||||||||||| ||||||| ||| |||||||||| |
|
|
| T |
4238913 |
gttacaaccgtttaagctagttgagtttcacatagttgcttgctacacaagtaacatatgcatcccaatctaattatcc |
4238991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 44272572 - 44272624
Alignment:
| Q |
260 |
gctagttaagtttcacacagttacttgctacacaagtaacaaatgcatctcaa |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
44272572 |
gctagttaagtttcacacagttacttgctacacaagtaacatatacatctcaa |
44272624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 166
Target Start/End: Complemental strand, 14973490 - 14973383
Alignment:
| Q |
57 |
atctcaaactccatgaaagcaaagattaagcttgcaatgtgcatagctttgaagaaaacaaaggaagtgagaaaaaggaattttattattctcaaaatct |
156 |
Q |
| |
|
||||||||||||||||||| | | | ||||||||||| | ||||||| ||||||| |||||| | || |||| | ||||||||| ||||| |||||||| |
|
|
| T |
14973490 |
atctcaaactccatgaaagtagaaaataagcttgcaa--tacatagctatgaagaagacaaagtatgtaagaagagggaattttactattcccaaaatct |
14973393 |
T |
|
| Q |
157 |
aagaattaca |
166 |
Q |
| |
|
|| |||||| |
|
|
| T |
14973392 |
gagtattaca |
14973383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 254 - 320
Target Start/End: Original strand, 33894486 - 33894552
Alignment:
| Q |
254 |
gtttaggctagttaagtttcacacagttacttgctacacaagtaacaaatgcatctcaagctaatta |
320 |
Q |
| |
|
|||||||| |||||||||| | ||||||||||||||| ||||||||||||| | ||||||||||| |
|
|
| T |
33894486 |
gtttaggcaagttaagttttaaacagttacttgctacccaagtaacaaatgtaatacaagctaatta |
33894552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 8564561 - 8564480
Alignment:
| Q |
83 |
taagcttgcaatgtgcatagctttgaagaaaacaaaggaagtgagaaaaaggaattttattattctcaaaatctaagaatta |
164 |
Q |
| |
|
|||| ||||||||||||||| ||| ||||| |||||| ||||| ||| ||||||||| ||||||| ||||| |||| |||| |
|
|
| T |
8564561 |
taagattgcaatgtgcatagatttaaagaagacaaagaaagtgtgaacaaggaatttcattattcagaaaatgtaagtatta |
8564480 |
T |
|
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Target: scaffold0638 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0638
Description:
Target: scaffold0638; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 156
Target Start/End: Original strand, 7948 - 8051
Alignment:
| Q |
52 |
aggtaatctcaaactccatgaaagcaaagattaagcttgcaatgtgcatagctttgaagaaaacaaaggaagtgagaaaaaggaattttattattctcaa |
151 |
Q |
| |
|
||||||||||||||| |||||||| || | || ||| |||||||||| ||||| ||||| |||| | | ||||||| |||||| |||||||||| ||| |
|
|
| T |
7948 |
aggtaatctcaaacttcatgaaagtgaaaaatagacttacaatgtgcatggctttaaagaagacaaggaaggtgagaagaaggaa-tttattattcacaa |
8046 |
T |
|
| Q |
152 |
aatct |
156 |
Q |
| |
|
||||| |
|
|
| T |
8047 |
aatct |
8051 |
T |
|
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