View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13261_high_13 (Length: 440)
Name: NF13261_high_13
Description: NF13261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13261_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 1319915 - 1319496
Alignment:
| Q |
1 |
ttcataatct-ataaacctattttgagaacgcaaaatcatggactaattggtttactttacacacataattttagtgtctcgatgtccttttaggtcgtt |
99 |
Q |
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| T |
1319915 |
ttcataatcttataaacctattttgagaacgcaaaatcatggactaattggtttactttacacacataattttagtgtctcgatatccttttaggtcgtt |
1319816 |
T |
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| Q |
100 |
aacaacttgtcagaactagctatatgacttgaatataaaatatacatacaggacaaacttggaatttcccatcacaacattttacatgtataaatataag |
199 |
Q |
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| T |
1319815 |
aacaacttgtcagaactagctatatgacttgaatataaaatatacatacaggacaaacttggaatttcccatcacaaca--ttacatgtataaatataag |
1319718 |
T |
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| Q |
200 |
taacaaattaaaaccagacatcaccaccttataaataacaagttgtacgttaaatattaattagttctaaacatcctcaatccacttcatagtataggtt |
299 |
Q |
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| T |
1319717 |
taacaaattaaaaccagacatcaccaccttataaataacaagttgtacgttaaatattaattagttctaaacatcctcaatccacttcatagtataggtt |
1319618 |
T |
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| Q |
300 |
tggattcttctacgatactaattaatctttctattttggtcatgcatgcaatctaatactaactaaatcaaactaattagttttgtaagtgcagtgatga |
399 |
Q |
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| T |
1319617 |
tggattcttc-----tactaattaatctttctattttggtcatgcatgcaatctaatactaactaaatcaaactaattagttttgtaagtgcagtgatga |
1319523 |
T |
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| Q |
400 |
tgagaacaccaagcaatgatgaaagtg |
426 |
Q |
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| T |
1319522 |
tgagaacaccaagcaatgatgaaagtg |
1319496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 426
Target Start/End: Original strand, 1281182 - 1281222
Alignment:
| Q |
386 |
aagtgcagtgatgatgagaacaccaagcaatgatgaaagtg |
426 |
Q |
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| T |
1281182 |
aagtgcagtgatgatgacaacaccaagcaatggtaaaagtg |
1281222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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