View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13261_high_18 (Length: 398)
Name: NF13261_high_18
Description: NF13261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13261_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 2360984 - 2361348
Alignment:
| Q |
1 |
aaaacattgattcagattcagctacttcttcagaagatgaacaacattgaagaactgaagtaggagaaaataaactcttattattattgttttgagattg |
100 |
Q |
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| T |
2360984 |
aaaacattgattcagattcagctacttcttcagaagatgaacaacattgaagaactgaagtaggagaaaataaactcttattattattgttttga----- |
2361078 |
T |
|
| Q |
101 |
tgattgagattgagattcttcaccggagtttgccggtaacggtaatgacggaagaggaatttcattttccggtggtggtgatgataactgacacgtggca |
200 |
Q |
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| T |
2361079 |
-------gattgagattcttcaccggagtttgccggtaacggtaatgacgaaagaggaatttcattttccggtggtggtgatgataactgacacgtggca |
2361171 |
T |
|
| Q |
201 |
gctgcacttacaggtggagttatgaaattagttagcgcgtctggtccacgcaacttaatagccgcgttgtcgtacacaatagcagcttcttcagccgttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2361172 |
gctgcacttacaggtggagttatgaaattagttagcgcgtctggtccacgcaacttaatagccgcgttgtcgtacacaatagcagcttcttcagccgttt |
2361271 |
T |
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| Q |
301 |
gaaatgtaccaagccacacacgcactccacgcgccgggtctcttatctccgccgcccattttccccatggtctctgc |
377 |
Q |
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| T |
2361272 |
gaaatgtaccaagccacacacgcactccacgcgccgggtctcttatctccgccgcccattttccccatggtctctgc |
2361348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 41747998 - 41747958
Alignment:
| Q |
336 |
gggtctcttatctccgccgcccattttccccatggtctctg |
376 |
Q |
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| T |
41747998 |
gggtctcttatctccgccgcccattttccccaaggtctctg |
41747958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 310
Target Start/End: Complemental strand, 41197611 - 41197538
Alignment:
| Q |
237 |
gcgtctggtccacgcaacttaatagccgcgttgtcgtacacaatagcagcttcttcagccgtttgaaatgtacc |
310 |
Q |
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| T |
41197611 |
gcgtctggtccacgaagcttaatagcggcattgtcataaaccatagcagcttcttctgcagtttcaaaagtacc |
41197538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 376
Target Start/End: Original strand, 43490153 - 43490190
Alignment:
| Q |
339 |
tctcttatctccgccgcccattttccccatggtctctg |
376 |
Q |
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||||||||||| || ||||||||||||||||||||||| |
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| T |
43490153 |
tctcttatctctgctgcccattttccccatggtctctg |
43490190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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