View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13261_high_19 (Length: 364)
Name: NF13261_high_19
Description: NF13261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13261_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 45865651 - 45865299
Alignment:
| Q |
1 |
tacattttcttcctcctatgattcatacttcgtagtcaaactgtcatttattgcaggttatctctgggaaatcttatgttgaacctgaagtagatgtttg |
100 |
Q |
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| T |
45865651 |
tacattttcttcctcctatgattcatacttcgtagtcaaactgtcatttattgcaggttatctctgggaaatcttatgttggacctgaagtagatgtttg |
45865552 |
T |
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| Q |
101 |
gagttgtggtataattttatacgcacttctctgcggcagtcttccttttgatgatgtaaatactccacaactcttcagaaaaataaaggtataannnnnn |
200 |
Q |
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| T |
45865551 |
gagttgtggtataattttatacgcacttctctgcggcagtcttccttttgatgatgtaaatactccacaactcttcagaaaaatgaaggtataattttgt |
45865452 |
T |
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| Q |
201 |
nnnnnnnnnngagtttgtgattgtgaggactaacagatttttatcacccaccactgtcatgtcatatttattggaatatggatttgggcctaactcatcc |
300 |
Q |
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| T |
45865451 |
ttttgtttttgagtttgtgattgtgaggactaacagatttttatcacccaccactgtcatgtcatatttattggaatatggatttgggcctaactcatac |
45865352 |
T |
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| Q |
301 |
ccttaaacaagttcgttggtgaaggttacttccaacttataaccattgttcat |
353 |
Q |
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| T |
45865351 |
ctttaaacaagttcgttggtgaaggttacttccaacttataaccattgttcat |
45865299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 5 - 194
Target Start/End: Complemental strand, 4054411 - 4054222
Alignment:
| Q |
5 |
ttttcttcctcctatgattcatacttcgtagtcaaactgtcatttattgcaggttatctctgggaaatcttatgttgaacctgaagtagatgtttggagt |
104 |
Q |
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| T |
4054411 |
ttttcttcctcctatgattctcagttcttggtcaaactgttattttttgtaggttatctctgggaaattatatgctggacctgaggtagatgtttggagc |
4054312 |
T |
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| Q |
105 |
tgtggtataattttatacgcacttctctgcggcagtcttccttttgatgatgtaaatactccacaactcttcagaaaaataaaggtataa |
194 |
Q |
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| T |
4054311 |
tgtggtgtaattttatatgcacttctctgtggcactctaccttttgatgatgaaaatattcccaacctcttcaaaaaaataaaggtataa |
4054222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 17404647 - 17404836
Alignment:
| Q |
1 |
tacattttcttcctcctatgattcatacttcgtagtcaaactgtcatttattgcaggttatctctgggaaatcttatgttgaacctgaagtagatgtttg |
100 |
Q |
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| T |
17404647 |
tacattttcttcctcctatgattcttacttggc---caaactgttcttt-ttgcaggttatctctgggaaattatatgctggacctgaagtagatgtttg |
17404742 |
T |
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| Q |
101 |
gagttgtggtataattttatacgcacttctctgcggcagtcttccttttgatgatgtaaatactccacaa-ctcttcagaaaaataaaggtataa |
194 |
Q |
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| T |
17404743 |
gagctgtggtgtaattttatatgcacttctctgtggcactcttccttttgatgatgaaaata-tccccaacctcttcaaaaaaataaaggtataa |
17404836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 221 - 307
Target Start/End: Original strand, 17404871 - 17404956
Alignment:
| Q |
221 |
ttgtgaggactaacagatttttatcacccaccactgtcatgtcatatttattggaatatggatttgggcctaactcatccccttaaa |
307 |
Q |
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|||| |||||||| |||||| ||| ||||||| |||||||||||||||||||||| | ||| ||||||||||||||| ||||||||| |
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| T |
17404871 |
ttgtaaggactaatagatttatattacccaccgctgtcatgtcatatttattggattttgggtttgggcctaactca-ccccttaaa |
17404956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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