View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13261_high_20 (Length: 253)

Name: NF13261_high_20
Description: NF13261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13261_high_20
NF13261_high_20
[»] chr4 (3 HSPs)
chr4 (16-253)||(4670329-4670570)
chr4 (76-167)||(29808110-29808201)
chr4 (133-194)||(46767279-46767340)
[»] chr3 (2 HSPs)
chr3 (58-172)||(48601330-48601444)
chr3 (58-200)||(40748904-40749042)
[»] scaffold0041 (1 HSPs)
scaffold0041 (132-200)||(83897-83965)
[»] chr7 (1 HSPs)
chr7 (132-200)||(40882318-40882386)
[»] scaffold0127 (1 HSPs)
scaffold0127 (58-201)||(14525-14671)
[»] chr8 (1 HSPs)
chr8 (71-194)||(34492606-34492729)
[»] chr2 (1 HSPs)
chr2 (58-113)||(18060909-18060964)
[»] scaffold0087 (3 HSPs)
scaffold0087 (58-115)||(2341-2398)
scaffold0087 (58-115)||(7090-7147)
scaffold0087 (58-115)||(17230-17287)
[»] chr5 (1 HSPs)
chr5 (126-170)||(27095039-27095083)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 4670329 - 4670570
Alignment:
Q  16 atgggccttaaacatgttaatcaacacaagactccacaatgttctctcttgtgctttagtgtttatttgtaatgagggtgtaatatttgggctaatcccc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||| |||||||||||||||||||||||| ||||||||||||    
T  4670329 atgggccttaaacatgttaatcaacacaagactccacaatgttctctcctgttcgttagtgtatatttgtaatgagggtgtaatattagggctaatcccc 4670428  T
Q  116 catagcttcgtttatacttgatttgtggttttagccgttttgttggttataccgcctttatatattggaatctcatctcgttcgac-----nnnnnnnga 210  Q
    ||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||            ||    
T  4670429 catagtttcgtttatatttgatttgtggttttagccgttttattggttataccgcctttatatattggaatctcatctcgttcgacaaaaaaaaaaaaga 4670528  T
Q  211 ctccaacaatgttagagattgcatcactcacaatatctttaga 253  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  4670529 ctcc-acaatgttagagattgcatcactcacaatatctttaga 4670570  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 76 - 167
Target Start/End: Complemental strand, 29808201 - 29808110
Alignment:
Q  76 gtttatttgtaatgagggtgtaatatttgggctaatcccccatagcttcgtttatacttgatttgtggttttagccgttttgttggttatac 167  Q
    ||||||||||| ||||||||||| || |||||| ||||| |  |||||||||| ||||||||||||||||||| ||||||||| ||||||||    
T  29808201 gtttatttgtattgagggtgtaaaatatgggcttatccctctgagcttcgtttgtacttgatttgtggttttaaccgttttgtcggttatac 29808110  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 46767340 - 46767279
Alignment:
Q  133 ttgatttgtggttttagccgttttgttggttataccgcctttatatattggaatctcatctc 194  Q
    |||||||||||||||||||||||| | ||||||||| ||||||| |||| ||||||||||||    
T  46767340 ttgatttgtggttttagccgttttatcggttataccacctttatctattagaatctcatctc 46767279  T

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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 58 - 172
Target Start/End: Complemental strand, 48601444 - 48601330
Alignment:
Q  58 tctctcttgtgctttagtgtttatttgtaatgagggtgtaatatttgggctaatcccccatagcttcgtttatacttgatttgtggttttagccgttttg 157  Q
    ||||||||| || ||||||||| ||||||||||  || |||||||||| |||||||| || |||||| ||| || |||||||||||||||| |||||||     
T  48601444 tctctcttgcgcgttagtgtttgtttgtaatgaaagtttaatatttggactaatccctcaaagcttcatttgtatttgatttgtggttttaaccgtttta 48601345  T
Q  158 ttggttataccgcct 172  Q
    |||||||||||||||    
T  48601344 ttggttataccgcct 48601330  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 58 - 200
Target Start/End: Original strand, 40748904 - 40749042
Alignment:
Q  58 tctctcttgtgctttagtgtttatttgtaatgagggtgtaatatttgggctaatcccccatagcttcgtttatacttgatttgtggttttagccgttttg 157  Q
    ||||||||| || ||||||||||||||||||||| ||||| ||||||| |||||  ||||||||||  ||| ||||||||||| ||||||| || |||      
T  40748904 tctctcttgcgcgttagtgtttatttgtaatgagagtgtattatttggactaat-tcccatagctttatttgtacttgatttgcggttttaaccttttca 40749002  T
Q  158 ttggttataccgcctttatatattggaatctcatctcgttcga 200  Q
    ||||||||||||| |||   ||||||||||||||||| |||||    
T  40749003 ttggttataccgcattt---tattggaatctcatctctttcga 40749042  T

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Target: scaffold0041 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 83965 - 83897
Alignment:
Q  132 cttgatttgtggttttagccgttttgttggttataccgcctttatatattggaatctcatctcgttcga 200  Q
    ||||||||||||||||| ||||||||| | ||||||||||||||| |||||||||||||||||||||||    
T  83965 cttgatttgtggttttaaccgttttgtcgattataccgcctttatctattggaatctcatctcgttcga 83897  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 40882318 - 40882386
Alignment:
Q  132 cttgatttgtggttttagccgttttgttggttataccgcctttatatattggaatctcatctcgttcga 200  Q
    ||||||||||||||||| ||||||||| | ||||||||||||||| |||||||||||||||||||||||    
T  40882318 cttgatttgtggttttaaccgttttgtcgattataccgcctttatctattggaatctcatctcgttcga 40882386  T

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Target: scaffold0127 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 58 - 201
Target Start/End: Original strand, 14525 - 14671
Alignment:
Q  58 tctctcttgtgctttagtgtttatttgtaatgagggtgtaatatttgggctaatcc---cccatagcttcgtttatacttgatttgtggttttagccgtt 154  Q
    ||||||||| || ||||||||||||| || | ||||||||||||||||| ||||     | || | |||| ||| | |||||||||||||||||||||||    
T  14525 tctctcttgcgcgttagtgtttatttatattaagggtgtaatatttgggttaattatatctcaaaacttcatttgttcttgatttgtggttttagccgtt 14624  T
Q  155 ttgttggttataccgcctttatatattggaatctcatctcgttcgac 201  Q
     ||| | |||||||| |||||| |||| ||||||||||| |||||||    
T  14625 ctgtcgattataccgtctttatttattagaatctcatcttgttcgac 14671  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 194
Target Start/End: Complemental strand, 34492729 - 34492606
Alignment:
Q  71 ttagtgtttatttgtaatgagggtgtaatatttgggctaatcccccatagcttcgtttatacttgatttgtggttttagccgttttgttggttataccgc 170  Q
    |||| ||||||||||| ||||||||||| || | |||||||||| || | |||| ||| | |||  |||||||||||| | |||||||  |||||||| |    
T  34492729 ttagggtttatttgtattgagggtgtaaaatataggctaatccctcaaaacttcatttgttcttattttgtggttttaacagttttgtaagttataccac 34492630  T
Q  171 ctttatatattggaatctcatctc 194  Q
    |||| | |||||||||||||||||    
T  34492629 ctttttctattggaatctcatctc 34492606  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 18060909 - 18060964
Alignment:
Q  58 tctctcttgtgctttagtgtttatttgtaatgagggtgtaatatttgggctaatcc 113  Q
    |||||||||||| |||||||||||||||||| || ||||| |||||||||||||||    
T  18060909 tctctcttgtgcgttagtgtttatttgtaataagagtgtattatttgggctaatcc 18060964  T

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Target: scaffold0087 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 2398 - 2341
Alignment:
Q  58 tctctcttgtgctttagtgtttatttgtaatgagggtgtaatatttgggctaatcccc 115  Q
    ||||||||| || ||||||||||| |||| | ||||||||||||||||| ||||||||    
T  2398 tctctcttgcgcgttagtgtttatatgtattaagggtgtaatatttgggttaatcccc 2341  T

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Target: scaffold0087; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 7147 - 7090
Alignment:
Q  58 tctctcttgtgctttagtgtttatttgtaatgagggtgtaatatttgggctaatcccc 115  Q
    ||||||||| || ||||||||||| |||| | ||||||||||||||||| ||||||||    
T  7147 tctctcttgcgcgttagtgtttatatgtattaagggtgtaatatttgggttaatcccc 7090  T

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Target: scaffold0087; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 17287 - 17230
Alignment:
Q  58 tctctcttgtgctttagtgtttatttgtaatgagggtgtaatatttgggctaatcccc 115  Q
    ||||||||| || ||||||||||| |||| | |||||||||||| |||| ||||||||    
T  17287 tctctcttgcgcgttagtgtttatatgtattaagggtgtaatatgtgggttaatcccc 17230  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 27095083 - 27095039
Alignment:
Q  126 tttatacttgatttgtggttttagccgttttgttggttataccgc 170  Q
    ||||||||||| ||||||||||| ||| ||| |||||||||||||    
T  27095083 tttatacttgacttgtggttttaaccgattttttggttataccgc 27095039  T

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