View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13261_high_26 (Length: 236)
Name: NF13261_high_26
Description: NF13261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13261_high_26 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 12243218 - 12243437
Alignment:
| Q |
3 |
aaacaatttccgaactaaaagaaa-tctgttgcggtatacaatagttaaatttgcgattgcatttgcatttattagtgtataacaagtgggaaatgtttt |
101 |
Q |
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| T |
12243218 |
aaacaatttccgaactaaaagaaaatctgttgcggtatacaatagttaaatttgcgattgcatttgcatttattagtggataaaaagtgggaaatgtttt |
12243317 |
T |
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| Q |
102 |
aaatattccccatgcttgttcttgaatatgctaatggatatgaggcattatgtaatacgttggcacagttgctgggaaaaacatttgccttattccttca |
201 |
Q |
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| T |
12243318 |
aaatattccccatgcttgttcttgaatatgctaatggatatgaggcattctgtaacacattggcacagttgctgggaaaaacatttgccttattccttca |
12243417 |
T |
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| Q |
202 |
gctttgataatggggaaaat |
221 |
Q |
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| T |
12243418 |
gccttgataatggggaaaat |
12243437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 70 - 221
Target Start/End: Complemental strand, 12318326 - 12318177
Alignment:
| Q |
70 |
tttattagtgtataacaagtgggaaatgttttaaatattccccatgcttgttcttgaatatgctaatggatatgaggcattatgtaatacgttggcacag |
169 |
Q |
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| T |
12318326 |
tttattagtggataacaattgggaaacatgttaaatattttccatgcttttcctagactatgccaatggat--gaggcattgtgtagtacgttgccacag |
12318229 |
T |
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| Q |
170 |
ttgctgggaaaaacatttgccttattccttcagctttgataatggggaaaat |
221 |
Q |
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| T |
12318228 |
ttgctgggaaaaacatttgccttattccttcagctttgataattgggaaaat |
12318177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 12411622 - 12411564
Alignment:
| Q |
163 |
ggcacagttgctgggaaaaacatttgccttattccttcagctttgataatggggaaaat |
221 |
Q |
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| T |
12411622 |
ggcacagttgatgggaaaagcatttgccatattccttcagccttgataatcgggaaaat |
12411564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 221
Target Start/End: Original strand, 36745136 - 36745224
Alignment:
| Q |
133 |
taatggatatgaggcattatgtaatacgttggcacagttgctgggaaaaacatttgccttattccttcagctttgataatggggaaaat |
221 |
Q |
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| T |
36745136 |
taatggacaggaggcattctgtaatatgctggcacacttgctggaaaaaacatttgtctcactccttcagccttgataatggggaaaat |
36745224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 23478628 - 23478706
Alignment:
| Q |
144 |
aggcattatgtaatacgttggcacagttgctgggaaaa-acatttgccttattccttcagctttgataatggggaaaat |
221 |
Q |
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| T |
23478628 |
aggcattctgtaatatgctggcacacttgctggaaaaaaacatttgtctcactccttcagccttgataatggggaaaat |
23478706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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