View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13261_high_3 (Length: 731)
Name: NF13261_high_3
Description: NF13261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13261_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 596; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 1 - 655
Target Start/End: Complemental strand, 4847781 - 4847125
Alignment:
| Q |
1 |
aacatcatcatcaagtgaataatagtgttggtagtattggagatgatggttctgttggaacagttaatggttgtggagagttacagactctaagcctttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4847781 |
aacatcatcatcaagtgaataatagtgttggtagtattggagatgatggttctgttggaacagttaatggttgtggagagttacagactctaagcctttc |
4847682 |
T |
|
| Q |
101 |
tatgagtcctggttctcaatcaagctgtgttactgttccaaatcagatttcagcttctggaactgattcagtagttgttgaagctaaaaagagaggacat |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4847681 |
tatgagtcctggttctcaatcaagttgtgttactgttccaaatcagatttcagcttctggaactgattcagtagttgttgaagctaaaaagagaggacat |
4847582 |
T |
|
| Q |
201 |
gctaaggttggacagaagcaacctgctcataggaaaactattagcacatttggtcaaagaacttctcagtatagaggagtgacaaggttagtttcgcttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4847581 |
gctaaggttggacagaagcaacctgctcataggaaaactattagcacatttggtcaaagaacttctcagtatagaggagtgacaaggttagtttcacttt |
4847482 |
T |
|
| Q |
301 |
tgtgtaacattattaatttgattctcattaatcatcttctttttaatccttgatatgactggtttgctgattgatttgattttagcaacgagatcaaact |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
4847481 |
tgtgtaacattattaatttgattctcattaatcatcttctttttaatccttgatatgactag-ttgctgattgatttgattttagcaacgagatcaaact |
4847383 |
T |
|
| Q |
401 |
agggttgaaacggttcaaccttggtgtttataccgggccttacctgacgaaggcccgacacatgttaataaaactgttaaaaaattgaatcacgactttt |
500 |
Q |
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| T |
4847382 |
agggttgaaacggttcaaccttggtgtttataccgggccttacttgatgaaggcccgacacatgttaataaaactgttaaaaaattgaatcacgactttt |
4847283 |
T |
|
| Q |
501 |
aagacc---ataagaatactatattgacttgttgtgaagctttgacattgtagtttgccttatttcaattatttgtcatccgattcgaccatagttaaac |
597 |
Q |
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|||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
4847282 |
aagaccataataataatactatattgacttgttgtgaagctttaacattgtagtttgccttatttcaattatttatcatccgattcaaccatagttaaac |
4847183 |
T |
|
| Q |
598 |
catttgaattctgatgaggaagtttcaaaaatggttttaattttatgagcattagcaa |
655 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4847182 |
cattcgaattctgatgaggaagtttcaaaaatggttttaattttatgagcattagcaa |
4847125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 73 - 288
Target Start/End: Original strand, 47752747 - 47752962
Alignment:
| Q |
73 |
gtggagagttacagactctaagcctttctatgagtcctggttctcaatcaagctgtgttactgttccaaatcagatttcagcttctggaactgattcagt |
172 |
Q |
| |
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|||| |||||||| || |||||||||| ||||| |||||||||||||| ||||||||||||||||| | ||||| ||| || ||||||| || ||||| |
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| T |
47752747 |
gtggtgagttacaatctttaagcctttcaatgagccctggttctcaatctagctgtgttactgttcctagacagatctcacctactggaacagaatcagt |
47752846 |
T |
|
| Q |
173 |
agttgttgaagctaaaaagagaggacatgctaaggttggacagaagcaacctgctcataggaaaactattagcacatttggtcaaagaacttctcagtat |
272 |
Q |
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| | || |||||||| |||||| ||||||| |||| || ||||| ||| |||||||||| ||||| ||| ||||| || ||||| ||||||||| |
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| T |
47752847 |
gactatggaggctaaaaaaagaggagctgctaagcttggtcaaaagcagcctattcataggaaatctattgacacttttggacagagaacatctcagtat |
47752946 |
T |
|
| Q |
273 |
agaggagtgacaaggt |
288 |
Q |
| |
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||||| || ||||||| |
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| T |
47752947 |
agaggtgtcacaaggt |
47752962 |
T |
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