View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13261_low_10 (Length: 557)
Name: NF13261_low_10
Description: NF13261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13261_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Original strand, 55042979 - 55043473
Alignment:
| Q |
18 |
caaacctccgcgataggttcgagcaaaacaaacacgtggttcgttgttttcccaatttcagatcatc-----------ttgcaattgcactttcactcac |
106 |
Q |
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| T |
55042979 |
caaacctccgcgataggttcgagcaaaacaaacacgtggttcgttgttttcccaatttcagatcatcatcatcgcatcttgcaattacactttcactcac |
55043078 |
T |
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| Q |
107 |
cctaatttaattttgtgattgtaataatttacaggaagatcttgatacgattgataggttgatagcggatgctgaagctagctacaataagtggcgccat |
206 |
Q |
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| T |
55043079 |
cctaatttaattttgtgattgtaataatttacaggaagatcttgatacgattgataggttgatagcggatgctgaagctagctacaataagtggcgccat |
55043178 |
T |
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| Q |
207 |
cccgatccttatataggtaaaacaacaacaaatcatatacttagtgtttggtattaatttgattttcattatccctagtatagcaggaatg--------- |
297 |
Q |
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| T |
55043179 |
cccgatccttatataggtaaaacaacaacaaatcatatacttagtgtttggtattaatttgattttcattatccctagtatagcaggaatgataagtaat |
55043278 |
T |
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| Q |
298 |
-----atgattgcaaatcagctgaatattattttacttagtgctataggagttgaggggactgtcataataagattatatcaaatgttcactagtatata |
392 |
Q |
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| T |
55043279 |
gacacatggttgcaaatcatctgaatattattttacttagtgctataggagttgaggggactgtcataataagattatatcaaatgttcactagtatata |
55043378 |
T |
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| Q |
393 |
acttacaaacagagctattagtttgaagcatttcatttacctcggctacagtctgccttcctttgtggcatagg--cactgactatgtattggcc |
485 |
Q |
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| T |
55043379 |
acttacaaacagagctattagtttgaagcatttcatttacctcggctacaatctgccttcctttgtggcataggcacactgactatgtattggcc |
55043473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 518 - 549
Target Start/End: Original strand, 55043517 - 55043548
Alignment:
| Q |
518 |
ctagtcttgagggttgatttttctcctttgct |
549 |
Q |
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| T |
55043517 |
ctagtcttgagggttgatttttctcctttgct |
55043548 |
T |
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