View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13261_low_11 (Length: 481)
Name: NF13261_low_11
Description: NF13261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13261_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 65 - 471
Target Start/End: Original strand, 49885733 - 49886141
Alignment:
| Q |
65 |
tgaataggcagagcaacaagatcctattttccgggaaatctcataaaaatatttaatgctaaatcacgtaataaggaaatctaatttaaaaggagacaat |
164 |
Q |
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| T |
49885733 |
tgaataggcagagcaacaagatcctattttccgggaaatctcataaaaagatttaatgctaaatcacgtaataaggaaatctaatttaaaaggagacaat |
49885832 |
T |
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| Q |
165 |
ataaatttgcattgaattatcatgnnnnnnnn--caaaattccattttagctataccaattcatcatacattaagcacatcaattttacatttattagta |
262 |
Q |
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| T |
49885833 |
ataaattcgcattgaattatcatgaaaaaaaaaacaaaattccattttagctataccaattcatcatacattaagcacatcaattttacatttattagta |
49885932 |
T |
|
| Q |
263 |
ttagttatgaatctcccaataattacaagttgaatttaagttaaacatcgcatcgctcctggattttttcttgaagctgtgctttcctaagtttcctttt |
362 |
Q |
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| T |
49885933 |
ttagttatgaatctcccaataattacaagttgaatttaagttaaacatcgcatcgctcctggattttttcttgaagctgtgctttcctaagtttcctttt |
49886032 |
T |
|
| Q |
363 |
tcatcaaacgaaatagtgccaattaggctatgatggcaaatgaaacaagaaaataattaaagataactaaaatgtcaaaactcattaaaagcacaattga |
462 |
Q |
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| T |
49886033 |
tcatcaaacgaaatagtgccaattaggctatgatggcaaatgaaacaagaaaataattaaagataactaaaatgtcaaaactcattaaaagcataattga |
49886132 |
T |
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| Q |
463 |
tatcctatg |
471 |
Q |
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| T |
49886133 |
tagcctatg |
49886141 |
T |
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