View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13261_low_12 (Length: 453)
Name: NF13261_low_12
Description: NF13261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13261_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 43408815 - 43409257
Alignment:
| Q |
1 |
tgaataattaggtatttgaagagctatatgaagcagccgtgaacgagataatggaagtgttggcttcagtgtgcaagacgcacaatttaccattagcact |
100 |
Q |
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| T |
43408815 |
tgaataattaggtatttgaagagctatatgaagcagcggtgaacgagataatggaagtgttggcgtcagtgtgcaagacgcacaatttaccattagcact |
43408914 |
T |
|
| Q |
101 |
aacatgggctccttgcctacaacaacaacaaggaggaggaaagggaagtagtggtgcatcaggttgtggtgtttcaactatgagttgctgcatatcaacg |
200 |
Q |
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| T |
43408915 |
aacatgggctccttgcctacaacaacaacaaggaggaggaaagggaagtagtggtgcatcaggttgtggtgtttcaactatgagttgctgcatatcaacg |
43409014 |
T |
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| Q |
201 |
gttgattcagcttgttatgttggtgacatggatgtattgggattccaagaagcgtgcagtgagtatcacctttttaatggacaaggaatagtaggaacag |
300 |
Q |
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| T |
43409015 |
gttgattcagcttgttatgttggtgacatggatgtattgggattccaagaagcgtgcagtgagtatcacctttttaatggacaaggaatagtaggaacag |
43409114 |
T |
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| Q |
301 |
ccttcacaacaaccaaaccttgttttgctattgatattactgccttcagcaaatctgaatatccacttgctcaccatgccaacatgtttggcttacacgc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43409115 |
ccttcacaacaaccaaaccttgttttgctattgatattactgccttcagcaaatctgaatatccacttgctcaccatgccaacatgtttggcttacacgc |
43409214 |
T |
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| Q |
401 |
tgctgttgccattccattgaggagtgtctacacaggttctgct |
443 |
Q |
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| T |
43409215 |
tgctgttgccattccattgaggagtgtctacactggttctgct |
43409257 |
T |
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