View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13261_low_13 (Length: 443)
Name: NF13261_low_13
Description: NF13261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13261_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 17 - 148
Target Start/End: Complemental strand, 40033688 - 40033557
Alignment:
| Q |
17 |
ttataaataccactctaatatggtacgaataccacgaaaaactgaagggataaaaagagtctaagaaaagacgaagaactcgttaacacaagtcgaagat |
116 |
Q |
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| T |
40033688 |
ttataaataccactctaatatggtacgaataccacgaaaaactgaagggataaaaggagtataagaaaagacgaagaactcgttaacacaagtcgaagat |
40033589 |
T |
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| Q |
117 |
taacatcaataggcttggcctacccaattccc |
148 |
Q |
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| T |
40033588 |
taacatcaataggcttggcttggccaattccc |
40033557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 194 - 329
Target Start/End: Complemental strand, 40033555 - 40033420
Alignment:
| Q |
194 |
agatcacagagagcttgaccacattagactccacatatagaacaactctacatcaagactatcttcttctctagttgcagggctttggttgacagccaat |
293 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||| |
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| T |
40033555 |
agatcacagagagcttgaccacattagattccacatatagaacaactctacatcaagactatcttcttctctagttgcggggctttgcttgacagtcaat |
40033456 |
T |
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| Q |
294 |
tccatttccttctcaacactatcaatctccttacca |
329 |
Q |
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| T |
40033455 |
tccctttccttctcagcattatcaatctccttacca |
40033420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 5740749 - 5740664
Alignment:
| Q |
25 |
accactctaatatggtacgaataccacgaaaaactgaagggataaaaagagtctaagaaaagacgaagaactcgttaacacaagtc |
110 |
Q |
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| T |
5740749 |
accactctaatatggtacgaataccactcaaaaccgaagagacataaatagtagaagaaaataagaagggctcgtcaacacaagtc |
5740664 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 113
Target Start/End: Original strand, 19725024 - 19725111
Alignment:
| Q |
25 |
accactctaatatggtacgaataccacgaaaaactgaagggataaaaagagtctaagaaaagacgaagaactcgttaacacaagtcgaa |
113 |
Q |
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||||||||| ||||||||||| ||||| |||||||||||| | || |||| |||||| || |||| |||||| ||||||||||||| |
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| T |
19725024 |
accactcta-tatggtacgaagaccactcgaaactgaagggacagaaggagtagaagaaaggaagaaggactcgtcaacacaagtcgaa |
19725111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 25188178 - 25188098
Alignment:
| Q |
33 |
aatatggtacgaataccacgaaaaactgaagggataaaaagagtctaagaaaagacgaagaactcgttaacacaagtcgaa |
113 |
Q |
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| T |
25188178 |
aatatggtacgaagaccactcgaaaccgaagggacaaaaggagtaaaagaaaggaagaaggactcgtcaacacaagtcgaa |
25188098 |
T |
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