View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13261_low_16 (Length: 427)
Name: NF13261_low_16
Description: NF13261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13261_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 320
Target Start/End: Complemental strand, 14168760 - 14168450
Alignment:
| Q |
13 |
gagatcaaaccaaccaacaaactaaaaccttttggtttagtccaatttttaaaacaatgaatttttcacaaagtttaacataatgttttagccctaaata |
112 |
Q |
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| T |
14168760 |
gagatcaaaccaaccaacaaactaaaatcttttggtttagtccaatttttaaaacaatgaatttttcacaaagtttaacataatgttttaggcctaaata |
14168661 |
T |
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| Q |
113 |
agattcttagcgtgtattttgcataatagttttcaagnnnnnnngctacttgagaaatcaaatcgaagctgtgggataaaatgaaaacatatcaac---a |
209 |
Q |
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| T |
14168660 |
agattcttagcatgtattttgcataatagttttcaagaaaaaaagctacttgagaaatcaaatcgaagctgtgggataaaatgaaaacataacaacaata |
14168561 |
T |
|
| Q |
210 |
ataataagattgaagaatatgatcttctaaaagactgtttgggaataatctgtatagaaatctgtgaaactcatcaattttactcaaaaattgagttatt |
309 |
Q |
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| T |
14168560 |
ataataagatcgaagaatatgatcttctaaaagactgtttgggaataatccgtacagaaatctgtgaaactcatcaattttactcaaaaattgagttaat |
14168461 |
T |
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| Q |
310 |
gggtccttaat |
320 |
Q |
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| T |
14168460 |
gtgtccttaat |
14168450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 320 - 412
Target Start/End: Complemental strand, 14167482 - 14167391
Alignment:
| Q |
320 |
tcatcttcattgtaatcaatttaaatggactaatttaccttcttaaataaaacttttttgatactatccctaatcatcttgatcctaattact |
412 |
Q |
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| T |
14167482 |
tcatcttcattgtaatcaatttaaatgaactaatttaccttcttaaaaaaaac-tttttgatactatccttaatccacttgatcctaattact |
14167391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 366
Target Start/End: Original strand, 41047561 - 41047593
Alignment:
| Q |
334 |
atcaatttaaatggactaatttaccttcttaaa |
366 |
Q |
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| T |
41047561 |
atcaatttaaatggactaatttaacttcttaaa |
41047593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 51948566 - 51948602
Alignment:
| Q |
335 |
tcaatttaaatggactaatttaccttcttaaataaaa |
371 |
Q |
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| T |
51948566 |
tcaatttaaatggactaatttaacttcttaaaaaaaa |
51948602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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