View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13261_low_17 (Length: 424)
Name: NF13261_low_17
Description: NF13261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13261_low_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 36188279 - 36188685
Alignment:
| Q |
1 |
acagaggaaattactgcaagaaaaagggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatctta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36188279 |
acagaggaaattactgcaagaaaaagggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatctta |
36188378 |
T |
|
| Q |
101 |
gttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttcatcatctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36188379 |
gttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttcatcatctc |
36188478 |
T |
|
| Q |
201 |
tgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgctcagataaaacctccaaacttgta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36188479 |
tgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgctcagataaaacctccaaacttgta |
36188578 |
T |
|
| Q |
301 |
gatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggacaccaatctcacctaaattgagtctcccatgaagatcatacattacaatcagga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36188579 |
gatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatctctcctaaattgagtcgaccatgaagatcatacattacaatcagga |
36188678 |
T |
|
| Q |
401 |
ctgtttg |
407 |
Q |
| |
|
||||||| |
|
|
| T |
36188679 |
ctgtttg |
36188685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 36196596 - 36197006
Alignment:
| Q |
1 |
acagaggaaattactgcaagaaaaaggg-aaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatctt |
99 |
Q |
| |
|
||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36196596 |
acagacgaaattactgcaagaaacaggggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatctt |
36196695 |
T |
|
| Q |
100 |
agttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttcatcatct |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36196696 |
agttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttcatcatct |
36196795 |
T |
|
| Q |
200 |
ctgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgctcagataaaacctccaaacttgt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36196796 |
ctgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgctcagataaaacctccaaacttgt |
36196895 |
T |
|
| Q |
300 |
agatgtgagcaatatcttgcaaccattatgatcttcaccaaa---ggggacaccaatctcacctaaattgagtctcccatgaagatcatacattacaatc |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||| |||||||||||| ||||| |
|
|
| T |
36196896 |
agatgtgagcaatatcttgcaaccattatgatcttcaccaaagggggggataccaatctcacctaaatcgagtctcccacgaagatcatacagtacaact |
36196995 |
T |
|
| Q |
397 |
aggactgtttg |
407 |
Q |
| |
|
||||||||||| |
|
|
| T |
36196996 |
aggactgtttg |
36197006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 36209720 - 36210118
Alignment:
| Q |
1 |
acagaggaaattactgcaagaaa-aagggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatctt |
99 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36209720 |
acagaggaaattactgcaagaaacaagggaaatcttaccataatggatacatgtatcggacataatacaaacacaagcatttgacagaatacaaaatctt |
36209819 |
T |
|
| Q |
100 |
agttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttcatcatct |
199 |
Q |
| |
|
|||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
36209820 |
agttcatctataactgcaaa-gcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttcgacttcagattttcatcatct |
36209918 |
T |
|
| Q |
200 |
ctgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgctcagataaaacctccaaacttgt |
299 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36209919 |
ctgctacaaacgctcttgttggaagaaaatcatgccatgtctct--------tatcaatttatgaaccttcatttgcttggataaaacctccaaacttgt |
36210010 |
T |
|
| Q |
300 |
agatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggacaccaatctcacctaaattgagtctcccatgaagatcatacattacaatcagg |
399 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36210011 |
agatgtcagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatctctcctaaattgagtcgaccatgaagatcatacattacaatcagg |
36210110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 165 - 407
Target Start/End: Original strand, 36213218 - 36213460
Alignment:
| Q |
165 |
gatgtgcatgtttggacttatgattttcatcatctctgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaatttatga |
264 |
Q |
| |
|
||||||||||||||||||| ||||| |||| ||||||| ||||| || | ||| ||||||||||||||||||||||| | ||||| |||||||||||| |
|
|
| T |
36213218 |
gatgtgcatgtttggacttcaaatttttatcaactctgcttcaaacactttagtttgaagagaatcatgtcatgtctctgataattgaatcaatttatga |
36213317 |
T |
|
| Q |
265 |
accttcatttgctcagataaaacctccaaacttgtagatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggacaccaatctcacctaaat |
364 |
Q |
| |
|
|||||||||| | ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36213318 |
gccttcatttgattggataaaacctccacacttgtagatgtgagtaatatcttgcaaccattatgatcttcaccaaaggggacaccaatctcacctaaat |
36213417 |
T |
|
| Q |
365 |
tgagtctcccatgaagatcatacattacaatcaggactgtttg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36213418 |
cgagtctcccatgaagatcatacattacaatcaggactgtttg |
36213460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 65 - 407
Target Start/End: Original strand, 36207688 - 36208031
Alignment:
| Q |
65 |
tacaaacacaagcatttgacagaata-caaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaa |
163 |
Q |
| |
|
||||| ||||||||||| |||||| | |||||||||||||||| || | | ||||| ||| | | |||||||||||||||||||||||||||||| | | |
|
|
| T |
36207688 |
tacaagcacaagcatttaacagaaaaacaaaatcttagttcatatacaacaacaaat-cacatgtgaacctctaatctctccaacatggtgttttcgata |
36207786 |
T |
|
| Q |
164 |
cgatgtgcatgtttggacttatgattttcatcatctctgctacaaacgctcttgttggaagagaa-tcatgtcatgtctctcacaattgtatcaatttat |
262 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||| || | ||| | || |||||||||||| ||||||||||||||| | |||||||| ||||||| |
|
|
| T |
36207787 |
tgatgtgcatgtttggacttcaaattttcatcaactctacttctaacacactggttggaagagaaatcatgtcatgtctctgataattgtattaatttat |
36207886 |
T |
|
| Q |
263 |
gaaccttcatttgctcagataaaacctccaaacttgtagatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggacaccaatctcacctaa |
362 |
Q |
| |
|
||||||||| || | |||||| ||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
36207887 |
caaccttcatatgtttggataaagcctccgagcttgtagatgtcagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatctcacctaa |
36207986 |
T |
|
| Q |
363 |
attgagtctcccatgaagatcatacattacaatcaggactgtttg |
407 |
Q |
| |
|
|| ||||| |||||||||||||||| ||||| || |||||||| |
|
|
| T |
36207987 |
atcaagtctaccatgaagatcatacagtacaactagtactgtttg |
36208031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 158 - 407
Target Start/End: Original strand, 36202310 - 36202559
Alignment:
| Q |
158 |
tccaaacgatgtgcatgtttggacttatgattttcatcatctctgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaa |
257 |
Q |
| |
|
||||||| |||| ||||||| ||||| ||||||||||||||||||| |||||||||| || ||||||| |||| |||||||||| ||||||||||||| |
|
|
| T |
36202310 |
tccaaactatgttcatgtttcgacttcagattttcatcatctctgcttcaaacgctctagtaagaagagattcatttcatgtctctgacaattgtatcaa |
36202409 |
T |
|
| Q |
258 |
tttatgaaccttcatttgctcagataaaacctccaaacttgtagatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggacaccaatctca |
357 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||| | |||||| ||| |
|
|
| T |
36202410 |
tttatgaaccttcatttctttggataaaacctccaaatttgtagatgtcagcaatatcttgcaacccttatgatcttcaccaaagggcataccaatttca |
36202509 |
T |
|
| Q |
358 |
cctaaattgagtctcccatgaagatcatacattacaatcaggactgtttg |
407 |
Q |
| |
|
| ||||| ||||| ||||| |||||||||||||||| ||||||||||| |
|
|
| T |
36202510 |
cttaaatcaagtctaccatggagatcatacattacaactaggactgtttg |
36202559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 65 - 407
Target Start/End: Original strand, 36184500 - 36184847
Alignment:
| Q |
65 |
tacaaacacaagcatttgacagaata-caaaatcttagttcatctatacctacaaaagcacttctcaac----ctctaatctctccaacatggtgttttc |
159 |
Q |
| |
|
||||| ||||||||||| |||||| | ||||||||||||||||||| | | || ||||||||| | ||| ||||||||||||||||||||||| ||| |
|
|
| T |
36184500 |
tacaagcacaagcatttaacagaaaaacaaaatcttagttcatctacaacaac-aaagcacttgtgaacctctctctaatctctccaacatggtgtcttc |
36184598 |
T |
|
| Q |
160 |
caaacgatgtgcatgtttggacttatgattttcatcatctctgctacaaacgctcttgttggaag-agaatcatgtcatgtctctcacaattgtatcaat |
258 |
Q |
| |
|
| | ||| | ||||||||||||| ||||||||||| ||||||| | ||| |||| |||||||| | ||||||||||||||||| | |||||||||| | |
|
|
| T |
36184599 |
cgtatgatattcatgtttggacttcagattttcatcaactctgcttctaacactctagttggaagaaaaatcatgtcatgtctctgataattgtatcact |
36184698 |
T |
|
| Q |
259 |
ttatgaaccttcatttgctcagataaaacctccaaacttgtagatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggacaccaatctcac |
358 |
Q |
| |
|
|||| ||||||||| || | ||||| ||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36184699 |
ttatcaaccttcatatgtttggataatgcctccgagcttgttgatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatctcac |
36184798 |
T |
|
| Q |
359 |
ctaaattgagtctcccatgaagatcatacattacaatcaggactgtttg |
407 |
Q |
| |
|
|||||| ||||| |||||||||||| ||| ||||| || |||||||| |
|
|
| T |
36184799 |
ctaaatcaagtctaccatgaagatcacacaatacaactagtactgtttg |
36184847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 90 - 407
Target Start/End: Original strand, 36200857 - 36201174
Alignment:
| Q |
90 |
acaaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgatt |
189 |
Q |
| |
|
|||||||||||||||||||| ||| ||| | |||| | |||||| |||||| ||||||||||||| |||||| | |||||||||||||| ||| || |
|
|
| T |
36200857 |
acaaaatcttagttcatctacaccaacaca-gcacctgtcaaccactaatcactccaacatggtgctttccatatgatgtgcatgtttgaactacaagtt |
36200955 |
T |
|
| Q |
190 |
ttcatcatctctgctacaaacgctcttgttggaagagaa-tcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgctcagataaaacc |
288 |
Q |
| |
|
||| ||| ||||||| ||||| ||| || |||| |||| |||| |||||||||| | || ||| ||||||||||||| ||||||| || ||||||||| |
|
|
| T |
36200956 |
ttcgtcaactctgcttcaaacagtctagtaggaaaagaaatcatatcatgtctctgataactgtgtcaatttatgaactgtcatttgttcggataaaacc |
36201055 |
T |
|
| Q |
289 |
tccaaacttgtagatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggacaccaatctcacctaaattgagtctcccatgaagatcataca |
388 |
Q |
| |
|
|||| |||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| |||||||||||||||| |
|
|
| T |
36201056 |
tccacacttttaggtgtgagcaataccttgcaaccattatgatcttcaccaaaggggacaccaatctcccctaaatcaaatctaccatgaagatcataca |
36201155 |
T |
|
| Q |
389 |
ttacaatcaggactgtttg |
407 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
36201156 |
gtacaactaggactgtttg |
36201174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 218 - 407
Target Start/End: Original strand, 36198962 - 36199152
Alignment:
| Q |
218 |
ttggaagagaatcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgctcagataaaacctccaaacttgt------agatgtgagcaa |
311 |
Q |
| |
|
|||||||| ||||||||||||||| | ||||||||| ||||||||||||||||| | ||||||| |||||||||||| |||||||||||| |
|
|
| T |
36198962 |
ttggaagataatcatgtcatgtct-----agttgtatcaagttatgaaccttcatttgtttggataaaatctccaaacttgtagttgtagatgtgagcaa |
36199056 |
T |
|
| Q |
312 |
tatcttgcaaccattatgatcttcaccaaaggggacaccaatctcacctaaattgagtctcccatgaagatcatacattacaatcaggactgtttg |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||||| |||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
36199057 |
tatcttgcaaccattatgatcttcaccaaaggggataccaatcttacttaaatcaagtctaccataaagatcatacactacaactaggactgtttg |
36199152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 102 - 183
Target Start/End: Original strand, 36198878 - 36198958
Alignment:
| Q |
102 |
ttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggactt |
183 |
Q |
| |
|
|||||||||||||| |||||||||| ||| |||||||||||||||||| |||||||||||| ||||||||||||| ||||| |
|
|
| T |
36198878 |
ttcatctataccta-aaaagcacttaccaatctctaatctctccaacattgtgttttccaaaggatgtgcatgtttagactt |
36198958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 91 - 203
Target Start/End: Original strand, 36214722 - 36214833
Alignment:
| Q |
91 |
caaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattt |
190 |
Q |
| |
|
|||| ||||| || ||||||||| ||||| |||||| |||| |||||||||| ||||||| |||||||||||| | |||||||||||||||| |||| |
|
|
| T |
36214722 |
caaagtcttaattgatctataccaacaaa-gcacttgtcaatctctaatctccccaacattgtgttttccaaataaagtgcatgtttggacttcaaattt |
36214820 |
T |
|
| Q |
191 |
tcatcatctctgc |
203 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
36214821 |
tcaccatctctgc |
36214833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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