View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13261_low_18 (Length: 404)
Name: NF13261_low_18
Description: NF13261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13261_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 28331553 - 28331943
Alignment:
| Q |
1 |
aattgcatccgagactactctattagagaatatttgggaattttcttgtaacacttgtttggctagttgtggtgatgagattactatggttgttaatgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28331553 |
aattgcatccgagactactctattagagaatatttgggaattttcttgtaacacttgtttggctagttgtggtgatgagattactatggttgttaatgtt |
28331652 |
T |
|
| Q |
101 |
cctagttttaatgtcatgattggtccataggtttttgagagttttgtaagtgccttgtgtggatttttgccaagttctaagatgtttccaattatgggaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28331653 |
cctagttttaatgtcatgattggtccataggtttttgagagttttgtgagtgccttgtgtgggtttttgccaagttctaagatgtttccaattatgggaa |
28331752 |
T |
|
| Q |
201 |
atgggtttggccctggtggaagcttagtggaattttgggtttgtttaacttttctaagaataaagatgagaatgcttgcacttgcaaaggtaaccactag |
300 |
Q |
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| T |
28331753 |
atgggtttggccctggtggaagcttggtggaattttgggtttgtttaacttttctaataataaagatgagaatgcttgcacttgcaaaggtaaccactag |
28331852 |
T |
|
| Q |
301 |
tagaagtgtttggtggttcatggctattttgtttttgagggaggtggtttatatcttcatcgcttttcccctttccattggttatatatatt |
392 |
Q |
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| T |
28331853 |
tagaagtgtttggtggttcatggctattttgtttttgagggaggtagtttatatctt-atcgcttttgccctttccattggttatatatatt |
28331943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 19 - 322
Target Start/End: Original strand, 28321092 - 28321395
Alignment:
| Q |
19 |
tctattagagaatatttgggaattttcttgtaacacttgtttggctagttgtggtgatgagattactatggttgttaatgttcctagttttaatgtcatg |
118 |
Q |
| |
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|||||| || || ||||| ||||| || ||||| ||||||||||||| |||||| || ||||| ||||||||||||| |||||||||||||||||||| |
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| T |
28321092 |
tctatttgaaaagatttgagaattgtcatgtaaaacttgtttggctacttgtggggaagagatcactatggttgttatgcttcctagttttaatgtcatg |
28321191 |
T |
|
| Q |
119 |
attggtccataggtttttgagagttttgtaagtgccttgtgtggatttttgccaagttctaagatgtttccaattatgggaaatgggtttggccctggtg |
218 |
Q |
| |
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|||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||| |
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| T |
28321192 |
attggtccatagatttttgagagttttgttaatgccttgtgtggatttttgccaagttctaagatgtttccaatgatgggaagtggctttggccctggtg |
28321291 |
T |
|
| Q |
219 |
gaagcttagtggaattttgggtttgtttaacttttctaagaataaagatgagaatgcttgcacttgcaaaggtaaccactagtagaagtgtttggtggtt |
318 |
Q |
| |
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|||| ||||| |||||||||||||| || |||||||||||| |||||||||||| |||||||| |||||| || |||||||||||||||||| |||| |
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| T |
28321292 |
gaagtttagtagaattttgggtttggtttgattttctaagaatgaagatgagaatggttgcacttacaaaggaaatcactagtagaagtgtttgatggtc |
28321391 |
T |
|
| Q |
319 |
catg |
322 |
Q |
| |
|
|||| |
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|
| T |
28321392 |
catg |
28321395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 28297030 - 28297325
Alignment:
| Q |
19 |
tctattagagaatatttgggaattttcttgtaacacttgtttggctagttgtggtgatgagattactatggttgttaatgttcctagttttaatgtcatg |
118 |
Q |
| |
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|||||||||||| |||||||||||||| ||||| |||||||||||| |||||| ||||| |||||||||||||||| |||||||||||||| ||||||| |
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| T |
28297030 |
tctattagagaagatttgggaattttcatgtaaggcttgtttggctacttgtggagatgaaattactatggttgttattgttcctagttttagtgtcatg |
28297129 |
T |
|
| Q |
119 |
attggtccataggtttttgagagttttgtaagtgccttgtgtggatttttgccaagttctaagatgtttccaattatgggaaatgggtttggccctggtg |
218 |
Q |
| |
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|||||||||||| ||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||||| || ||||||| ||||| ||||||||||| |
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| T |
28297130 |
attggtccatagttttgtgagagttttgtgagtgccttatgtgggtttttgccaagttctaagatgtttcctatgatgggaagtgggtatggccctggtg |
28297229 |
T |
|
| Q |
219 |
gaagcttagtggaattttgggtttgtttaacttttctaagaataaagatgagaatgcttgcacttgcaaaggtaaccactagtagaagtgtttggt |
314 |
Q |
| |
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|||| ||||| |||||||||||||| | | |||||||||||| |||||||||||| ||| || | |||||| |||||||||||||||||||| |
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| T |
28297230 |
gaagtttagtagaattttgggtttggattaattttctaagaatgaagatgagaatggttgtacacaaagaggtaatcactagtagaagtgtttggt |
28297325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 28310518 - 28310813
Alignment:
| Q |
19 |
tctattagagaatatttgggaattttcttgtaacacttgtttggctagttgtggtgatgagattactatggttgttaatgttcctagttttaatgtcatg |
118 |
Q |
| |
|
|||||||||||| ||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28310518 |
tctattagagaagatttgagaattttcatgtaaaacttgtttggctagttgaggtgatgagattactatggttgttaatgttcctagttttagtgtcata |
28310617 |
T |
|
| Q |
119 |
attggtccataggtttttgagagttttgtaagtgccttgtgtggatttttgccaagttctaagatgtttccaattatgggaaatgggtttggccctggtg |
218 |
Q |
| |
|
|||||||||||| | |||||||| ||||| |||| | ||||||||||||||||||||| |||||||||||| || ||||||| ||| ||||||||||||| |
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| T |
28310618 |
attggtccatagatgtttgagagatttgtgagtgtcctgtgtggatttttgccaagttgtaagatgtttcctatgatgggaagtggttttggccctggtg |
28310717 |
T |
|
| Q |
219 |
gaagcttagtggaattttgggtttgtttaacttttctaagaataaagatgagaatgcttgcacttgcaaaggtaaccactagtagaagtgtttggt |
314 |
Q |
| |
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|||| || || |||||||| ||||| || | |||| ||| ||| |||||||||||||| |||| | |||||| ||| |||||||||||||||| |
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| T |
28310718 |
gaagttttgtagaattttgagtttggtttaattttttaaaaatgaagatgagaatgctcgcacacaaagaggtaatcaccagtagaagtgtttggt |
28310813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 19 - 290
Target Start/End: Complemental strand, 28288183 - 28287912
Alignment:
| Q |
19 |
tctattagagaatatttgggaattttcttgtaacacttgtttggctagttgtggtgatgagattactatggttgttaatgttcctagttttaatgtcatg |
118 |
Q |
| |
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|||||| ||||| ||||| |||||||| ||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
28288183 |
tctatttgagaagatttgagaattttcatgtaaaacttgtttggctaattgtggtgatgaaattactatggttgttaatgttcctagttttagtgtcata |
28288084 |
T |
|
| Q |
119 |
attggtccataggtttttgagagttttgtaagtgccttgtgtggatttttgccaagttctaagatgtttccaattatgggaaatgggtttggccctggtg |
218 |
Q |
| |
|
|||||||||||| | |||||||| ||||| |||| | ||||||| ||||||||||||| |||||||||||| || ||||||| ||| ||||||||||||| |
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|
| T |
28288083 |
attggtccatagatgtttgagagatttgtgagtgtcctgtgtgggtttttgccaagttgtaagatgtttcctatgatgggaagtggctttggccctggtg |
28287984 |
T |
|
| Q |
219 |
gaagcttagtggaattttgggtttgtttaacttttctaagaataaagatgagaatgcttgcacttgcaaagg |
290 |
Q |
| |
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|||| || || |||||||| ||||| || | |||||||||||| | |||||| |||||||||||| |||||| |
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| T |
28287983 |
gaagttttgtagaattttgagtttggtttaattttctaagaatgaggatgaggatgcttgcacttacaaagg |
28287912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 53 - 185
Target Start/End: Original strand, 28336389 - 28336523
Alignment:
| Q |
53 |
acttgtttggctagttgtggtgatgagattactatggttgttaatgtt-cctagttttaatgtcatgattggtccataggtttttgagag---ttttgta |
148 |
Q |
| |
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|||||||||| ||||||||| |||||||||||||||| |||| ||||| || ||||||| ||||||||||||||| ||| |||| ||||| |||||| |
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| T |
28336389 |
acttgtttggttagttgtggggatgagattactatggatgtt-atgttgccaagttttagtgtcatgattggtccgtagattttagagagtttttttgtg |
28336487 |
T |
|
| Q |
149 |
agtgccttgtgtggatttttgccaagttctaagatgt |
185 |
Q |
| |
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|||| ||||||||| ||||| | ||||||| |||||| |
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|
| T |
28336488 |
agtgacttgtgtgggttttt-caaagttctgagatgt |
28336523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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