View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13261_low_21 (Length: 262)
Name: NF13261_low_21
Description: NF13261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13261_low_21 |
 | |
|
| [»] scaffold0137 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 3896728 - 3896961
Alignment:
| Q |
19 |
gattatggtatagacattttaccatgtcatcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaaccgtgctgtctttgtagtattcatc |
118 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3896728 |
gattattgtatagacattttaccatgtcatcaaaagtccagaggatgatgttgtttctcaaaagttgcatgcgaaccgtgctgtctttgtagtattcatc |
3896827 |
T |
|
| Q |
119 |
tcccaatttgagctcattacgtgcttcatctaaagcctatcaacaaggaaaagaaaattgattcagtacatgtacaagccaaacatgaacagaaaagaga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3896828 |
tcccaatttgagctcattacgtgcttcatctaaagcctatcaacaaggaaaagaaaattgattcagtacatgtacaagccaaacatgaacagaaaagaga |
3896927 |
T |
|
| Q |
219 |
gacacataaagcatttgataagaataggcctttg |
252 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
3896928 |
gacacataaagcatttgataagaataggtctttg |
3896961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 185
Target Start/End: Complemental strand, 46285194 - 46285038
Alignment:
| Q |
32 |
acattttaccatgtcatcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaaccgtgctgtctttgtagtattcatctcccaatttg--- |
128 |
Q |
| |
|
|||||||||| | ||||| ||||||| ||||||| ||||| ||||||||||||||| || ||||||||||||||| |||| ||||||||| || |
|
|
| T |
46285194 |
acattttacctggacatcagaagtccaaagggtgaggttgtctctcaaaagttgcattataagtgtgctgtctttgtaggattcttctcccaatgtgtcc |
46285095 |
T |
|
| Q |
129 |
agctcattacgtgcttcatctaaagcctatcaacaaggaaaagaaaattgattcagt |
185 |
Q |
| |
|
|| ||| | |||||| || |||||||||| | ||||||||||| |||| |||||| |
|
|
| T |
46285094 |
agttcagcaattgcttcctcaaaagcctatccagaaggaaaagaatattgtttcagt |
46285038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 4382 - 4615
Alignment:
| Q |
19 |
gattatggtatagacattttaccatgtcatcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaaccgtgctgtctttgtagtattcatc |
118 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4382 |
gattattgtatagacattttaccgtgtcatcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaaccgtgctgtctttgtagtattcatc |
4481 |
T |
|
| Q |
119 |
tcccaatttgagctcattacgtgcttcatctaaagcctatcaacaaggaaaagaaaattgattcagtacatgtacaagccaaacatgaacagaaaagaga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4482 |
tcccaatttgagctcattacgtgcttcatctaaagcctatcaacaaggaaaataaaattgattcagtacaagtacaagccaaacatgaacagaaaagaga |
4581 |
T |
|
| Q |
219 |
gacacataaagcatttgataagaataggcctttg |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
4582 |
gacacataaagcatttgataagaataggcctttg |
4615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University