View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13261_low_24 (Length: 251)
Name: NF13261_low_24
Description: NF13261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13261_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 105 - 246
Target Start/End: Original strand, 43409423 - 43409564
Alignment:
| Q |
105 |
tcttcagctgatcatgatcatgatcaattcaccttcccaacaacaaatagttacatgccttcttctgcttctgaaccactatcacaagttgatgcagttt |
204 |
Q |
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| T |
43409423 |
tcttcagctgaccatgatcatgatcaattcaccttcccaacaacaaatagttacatgccttcttctgcttctgaaccactatcacaagttgatgcagttt |
43409522 |
T |
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| Q |
205 |
caggctgttcaaccaaagacacttcatcatcatattcttgga |
246 |
Q |
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| T |
43409523 |
caggttgttcaaccaaagacacttcatcatcatgttcttgga |
43409564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 43409316 - 43409390
Alignment:
| Q |
1 |
aacaaatgctaaactcattgtcccttgttgttcaacaagcttgtaggagcttgcatttgcatgtcgtcatggacg |
75 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43409316 |
aacaaatgctaaactcattgtcccttgttgttcaacaagcttgtaggagcttgcatttgcatgtcgtcatggacg |
43409390 |
T |
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