View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13261_low_26 (Length: 241)
Name: NF13261_low_26
Description: NF13261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13261_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 15 - 144
Target Start/End: Complemental strand, 4838471 - 4838342
Alignment:
| Q |
15 |
agagatgcaatcgaagggtacaccttatagatttctcagcttttatttttagcttcatcattttccggtcatggacacgttatatttgttgtgcacacac |
114 |
Q |
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| T |
4838471 |
agagatgcaatcgaagggcacaccttatagattgctcggcttttatttttagcttcatcatttcacggtcatggacacattatatttgttgtgcacacac |
4838372 |
T |
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| Q |
115 |
attatagtcgaataatttgaattagtaaca |
144 |
Q |
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| T |
4838371 |
attatagtcgaataatttgaaccagtaaca |
4838342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 15 - 187
Target Start/End: Complemental strand, 4858438 - 4858264
Alignment:
| Q |
15 |
agagatgcaatcgaagggtacaccttatagatttctcagcttttatttttagcttcatcattttc--cggtcatggacacgttatatttgttgtgcacac |
112 |
Q |
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| T |
4858438 |
agagatgcaattgaagggtaatccttatagatcgctcagttttcatttttagcttcatcattttttacggtgactgacacattatatttgttgcgcacag |
4858339 |
T |
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| Q |
113 |
acattatagtcgaataatttgaattagtaacaaatgtataagaataattaattcccttatttttgcaaaaactgc |
187 |
Q |
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| T |
4858338 |
acattacattcgaataatttgaattagtaacaaatgtataagaataattaattcccttatttctgcaaaaactgc |
4858264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 113 - 193
Target Start/End: Original strand, 5176125 - 5176205
Alignment:
| Q |
113 |
acattatagtcgaataatttgaattagtaacaaatgtataagaataattaattcccttatttttgcaaaaactgcaacatt |
193 |
Q |
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| T |
5176125 |
acattatagtcgaattatttgaattattaacaaatgtataagattaattaatacccttatttgtgcaaaaactgcaacatt |
5176205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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