View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13261_low_3 (Length: 839)

Name: NF13261_low_3
Description: NF13261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13261_low_3
NF13261_low_3
[»] chr6 (4 HSPs)
chr6 (426-526)||(12594505-12594605)
chr6 (714-810)||(12594412-12594508)
chr6 (17-91)||(15690529-15690603)
chr6 (17-109)||(6672393-6672485)
[»] chr3 (2 HSPs)
chr3 (54-367)||(9631285-9631623)
chr3 (672-810)||(9631641-9631777)
[»] chr7 (1 HSPs)
chr7 (57-367)||(16775034-16775369)
[»] chr4 (1 HSPs)
chr4 (310-392)||(36085802-36085884)


Alignment Details
Target: chr6 (Bit Score: 97; Significance: 3e-47; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 426 - 526
Target Start/End: Complemental strand, 12594605 - 12594505
Alignment:
Q  426 tagatagatagatcagatagtggcgacaaattctgtagtgtggtcgagctctgattggttgagtttgtttagattccagtttatgactttatcccattct 525  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12594605 tagatagatagatcagatagtggcgacaatttctgtagtgtggtcgagctctgattggttgagtttgtttagattccagtttatgactttatcccattct 12594506  T
Q  526 t 526  Q
    |    
T  12594505 t 12594505  T

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Target: chr6; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 714 - 810
Target Start/End: Complemental strand, 12594508 - 12594412
Alignment:
Q  714 tcttagttggttattacaaggaatagaacatataaatgaagatgcaactataggagaccttactggttttatattggctgcatttgtattttgatgt 810  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||| | ||||||||| |||||||||||||| |||||||||||||||||    
T  12594508 tcttagttggttattacaaggaatagaacatagaaatgaagatacaactatatgtgaccttactagttttatattggctacatttgtattttgatgt 12594412  T

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Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 15690603 - 15690529
Alignment:
Q  17 tcatcttcgtcttgcttttgatgaggttaactcagaacacgattcagtcaggtagattatatcacatatttatct 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||| |||||||    
T  15690603 tcatcttcgtcttgcttttgatgaggttaactcagaacacgattcagtcgggtagattccatcacatgtttatct 15690529  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 6672393 - 6672485
Alignment:
Q  17 tcatcttcgtcttgcttttgatgaggttaactcagaacacgattcagtcaggtagattatatcacatatttatctcataaaattcattctatc 109  Q
    |||||||||||||||||||| |||||||||  |||||||||||||| |||||||||||  ||||||||| ||||| |||  | ||||||||||    
T  6672393 tcatcttcgtcttgcttttgctgaggttaatccagaacacgattcaatcaggtagattccatcacatatctatctaataccaatcattctatc 6672485  T

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Target: chr3 (Bit Score: 90; Significance: 5e-43; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 54 - 367
Target Start/End: Original strand, 9631285 - 9631623
Alignment:
Q  54 cacgattcagtcaggtagattatatcacatatttatctcataaaattcattctatcttcattgcattgttgtatttagggttctgatttccctctgtttc 153  Q
    ||||||||||| |||||||||  ||||||||| ||||| | |  ||||||||||||  ||| |  ||||||||||  |||||||||||||||||||||||    
T  9631285 cacgattcagtaaggtagattccatcacatatctatctaacactattcattctatcc-catcgtgttgttgtattaggggttctgatttccctctgtttc 9631383  T
Q  154 attcttagatgcaagatcaattggattttaggggnnnnnnnn-----tgataataggtctgaatcagtttatgtcttattctatctttctccatcatcaa 248  Q
    ||||||||||||  |||||||| |||||||||||             ||||||||  |||| |||||||||||||||||| |||||||||||||| ||||    
T  9631384 attcttagatgcttgatcaattagattttaggggaaaataggaaaaatgataataaatctggatcagtttatgtcttattttatctttctccatcctcaa 9631483  T
Q  249 tttcaggcataaggttttgattttgttatatctttctga-------gc-------------atgtatgctaaatgtgggtgtttggagat-ggcacataa 327  Q
    || |||| |||||  |||||||||||||||| |||||||       ||             ||||||||||||||||||||||||||||  |||||||||    
T  9631484 ttgcaggtataagtatttgattttgttatatgtttctgatatataggccaagttgatgactatgtatgctaaatgtgggtgtttggagaaaggcacataa 9631583  T
Q  328 agtgtttgatgaaatgcttgtgagggattagtttgcttgg 367  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  9631584 agtgtttgatgaaatgcttgtgagggatttgtttacttgg 9631623  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 672 - 810
Target Start/End: Original strand, 9631641 - 9631777
Alignment:
Q  672 atgtttagcagcatatacattgaattaaaaggtttgtgatgatcttagttggttattacaaggaatagaacatataaatgaagatgcaactataggagac 771  Q
    |||| |||||||||||||| || |||||| ||| ||||||||| | |||| || |||||||||||||||||||| ||||||| ||||||| |||||||||    
T  9631641 atgtgtagcagcatatacactgtattaaa-ggtgtgtgatgatttcagtttgtaattacaaggaatagaacatagaaatgaatatgcaaccataggagac 9631739  T
Q  772 cttactggttttatattggctgcatttgtattttgatgt 810  Q
    |||| | |||||||||| | | |||||||||| ||||||    
T  9631740 cttattagttttatatt-gttacatttgtattgtgatgt 9631777  T

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Target: chr7 (Bit Score: 83; Significance: 7e-39; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 57 - 367
Target Start/End: Original strand, 16775034 - 16775369
Alignment:
Q  57 gattcagtcaggtagattatatcacatatttatctcataaaattcattctatcttcattgcattgttgtatttagggttctgatttccctctgtttcatt 156  Q
    ||||||||||||||||||  ||||||||| ||||| | |  |||||||||| |  |||    ||||||||||||||||||||||||||||||||||||||    
T  16775034 gattcagtcaggtagattccatcacatatctatctaacaccattcattctagcc-catcatgttgttgtatttagggttctgatttccctctgtttcatt 16775132  T
Q  157 cttagatgcaagatcaattggattttaggggnnnnnnnn-----tgataataggtctgaatcagtttatgtcttattctatctttctccatcatcaattt 251  Q
    |||| ||||  ||| ||||||||||||||||             ||||||||  |||| ||||||||||||||||||||||||||||||||| ||||||     
T  16775133 cttaaatgcttgattaattggattttaggggaaaataggaaaaatgataataaatctggatcagtttatgtcttattctatctttctccatcctcaattg 16775232  T
Q  252 caggcataaggttttgattttgttatatctttctga-------gc-------------atgtatgctaaatgtgggtgtttggag-atggcacataaagt 330  Q
    |||| |||||  |||||||||||||||| |||||||       ||             ||||||||||||||||||||||||||| | | ||||||||||    
T  16775233 caggtataagtgtttgattttgttatatgtttctgatatatatgccaagttgatgattatgtatgctaaatgtgggtgtttggagaaagacacataaagt 16775332  T
Q  331 gtttgatgaaatgcttgtgagggattagtttgcttgg 367  Q
     ||||||||||||||||||||||||| |||| |||||    
T  16775333 atttgatgaaatgcttgtgagggatttgtttacttgg 16775369  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 310 - 392
Target Start/End: Complemental strand, 36085884 - 36085802
Alignment:
Q  310 tttggagatggcacataaagtgtttgatgaaatgcttgtgagggattagtttgcttggaatgttatgattggtccttgttcaa 392  Q
    |||||||| ||||||||||||||||||||||||| |||||| | ||| |||| |||||  || |||||||||| |||||||||    
T  36085884 tttggagaaggcacataaagtgtttgatgaaatgattgtgatgaatttgtttacttggtctgctatgattggttcttgttcaa 36085802  T

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