View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13261_low_5 (Length: 715)
Name: NF13261_low_5
Description: NF13261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13261_low_5 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 643; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 9 - 695
Target Start/End: Complemental strand, 21704959 - 21704273
Alignment:
| Q |
9 |
gagaagaacctcaagcattgttaactttgctacaaaagaaatgtcacctaacttcaacccattcaagcgcagagttcgaacatttgttaaaaattggatt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
21704959 |
gagaagaacctcaagcattgttaactttgctacaaaagaaatgtcatctaacttcaacccattcaagcgcagagttcgaacatttgttaaaaattggact |
21704860 |
T |
|
| Q |
109 |
gatggaggcaatgagaatagtagtacatcatgataggaatcattgtttagagaaaaaaccttgagtccatctattctttcaaatgttaaatttgataata |
208 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
21704859 |
gatggaggcaatgagaagaatagtacatcatgataggaatcattggttaaagaaaaaaccttgagtccatcaattccttcaaatgttaaatttgataata |
21704760 |
T |
|
| Q |
209 |
caaaggaactttgtgatatactggtatttatgtgtagcaacaacatttgaagttttgcagcttgcaatggaccaataattggattttcattttcccacca |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21704759 |
caaaggaactttgtgatatactggtatttatgtgtagcaacaacatttgaacttttgcagcttgcaatggaccaataattggattttcattttcccacca |
21704660 |
T |
|
| Q |
309 |
tgatgataccgcaaaataattttgtatactatcgtcccctgccaaggtgttgagaggtttgtcaacatttaccaaaattttgtgatcctctgacctcttt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
21704659 |
tgatgataccgcaaaataattttgtatactatcgtcccctgccaaggtgttgagaggtttgtcaacatttaccaaaattttgcgatcctctgacctcttt |
21704560 |
T |
|
| Q |
409 |
gctatccataaggccacttcgcgaaccaagtcatgcatcttcacacatttcatgtcttcagcaggcatcagcaaacaagattctacaagtttgtctatgg |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21704559 |
gctatccataaggccacttcgcgaaccaagtcatgcatcttcacacattccatgtcttcagcaggcatcagcaaacaagattctacaagtttgtctatgg |
21704460 |
T |
|
| Q |
509 |
caacttgaatcaaaatccttgatatcttcagtggatgtcttcctcccacacccagtccaattgcatatatgattaaatcttctattgatatgttgtaatc |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21704459 |
caacttgaatcaaaatccttgatatcttcagtggatgtcttcctcccacacccagtccaattgcatatatgattaaatcttctattgatatgttgtaatc |
21704360 |
T |
|
| Q |
609 |
ttctggaaacatagaacacatcaaaaagagcaactctgcttccttgttttgtaaatatgtatagcttagttcaagacaacttaaagc |
695 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21704359 |
ttctggaaacatagaacacatcaaaaagagcaactctgcttccttgttttgtaaatatgtatagcttagttcaagacaacttaaagc |
21704273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 12 - 695
Target Start/End: Original strand, 21714563 - 21715243
Alignment:
| Q |
12 |
aagaacctcaagcattgttaactttgctacaaaagaaatgtcacctaacttcaacccattcaagcgcagagttcgaacatttgttaaaaattggattgat |
111 |
Q |
| |
|
||||||||| ||| ||||||| |||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||| || | |||||||||| |
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|
| T |
21714563 |
aagaacctcgagccttgttaagcttgctataaaagaaatgttacccaacttcaacccattcaagcgcagagttcgaacatttgtcaacatttggattgat |
21714662 |
T |
|
| Q |
112 |
ggaggcaatgagaatagtagtacatcatgataggaatcattgtttagagaaaaaaccttgagtccatctattctttcaaatgttaaatttgataatacaa |
211 |
Q |
| |
|
||||||||||||||||||| | ||| || |||||||||| |||||||||| |||||||| || ||||||| ||||||||||||||||||||| |||| |
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|
| T |
21714663 |
ggaggcaatgagaatagtact---tcactattggaatcattggttagagaaaataccttgagcccttctattccttcaaatgttaaatttgataaaacaa |
21714759 |
T |
|
| Q |
212 |
aggaactttgtgatatactggtatttatgtgtagcaacaacatttgaagttttgcagcttgcaatggaccaataattggattttcattttcccaccatga |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||| ||||||||||||| ||||||| | ||||||||| |
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|
| T |
21714760 |
aggaactttgtgatatactggtatttatgtgtagcaacaacatttcaaggtttgcagcctgcaatgaaccaataattggaatttcattgtgccaccatga |
21714859 |
T |
|
| Q |
312 |
tgataccgcaaaataattttgtatactatcgtcccctgccaaggtgttgagaggtttgtcaacatttaccaaaattttgtgatcctctgacctctttgct |
411 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| | |||||||||||||| |
|
|
| T |
21714860 |
tgataccgcaaaataattttgcatactatcgtcccctgccaaggtgttgagaggtttgtcaacatttagcaaaattttttgattccctgacctctttgct |
21714959 |
T |
|
| Q |
412 |
atccataaggccacttcgcgaaccaagtcatgcatcttcacacatttcatgtcttcagcaggcatcagcaaacaagattctacaagtttgtctatggcaa |
511 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||| |||| |||||||| ||| |||||||||||||| ||||||| ||| |||| |||| | | |
|
|
| T |
21714960 |
atccatatggccacttcacgaaccaagtcatgcatcttcacgcattgcatgtctttagccggcatcagcaaacatgattctaaaagcttgtttatgccga |
21715059 |
T |
|
| Q |
512 |
cttgaatcaaaatccttgatatcttcagtggatgtcttcctcccacacccagtccaattgcatatatgattaaatcttctattgatatgttgtaatcttc |
611 |
Q |
| |
|
|||||| |||| ||||||||| |||||||||| ||||||||||||||| ||||| |||||||||| ||||||||| || |||||||||||| ||||||| |
|
|
| T |
21715060 |
cttgaaccaaactccttgataacttcagtggagatcttcctcccacacctagtcctattgcatataggattaaatcatcgattgatatgttgcaatcttc |
21715159 |
T |
|
| Q |
612 |
tggaaacatagaacacatcaaaaagagcaactctgcttccttgttttgtaaatatgtatagcttagttcaagacaacttaaagc |
695 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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|
| T |
21715160 |
tggaaacatagaacacaacaaaaagagcaactctgcttccttgttttgtaaatatttatagcttagttcaagacaactcaaagc |
21715243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 442 - 695
Target Start/End: Complemental strand, 21623023 - 21622772
Alignment:
| Q |
442 |
tgcatcttcacacatttcatgtcttcagcaggcatcagcaaacaagattctacaagtttgtctatggcaacttgaatcaaaatccttgatatcttcagtg |
541 |
Q |
| |
|
||||||||||||| || |||||||| ||| |||||||||||||| ||||||| ||| |||| |||| | |||||| |||| ||||||||| |||||||| |
|
|
| T |
21623023 |
tgcatcttcacacgttgcatgtctttagccggcatcagcaaacatgattctaaaagcttgtttatgccgtcttgaaccaaactccttgataacttcagtg |
21622924 |
T |
|
| Q |
542 |
gatgtcttcctcccacacccagtccaattgcatatatgattaaatcttctattgatatgttgtaatcttctggaaacatagaacacatcaaaaagagcaa |
641 |
Q |
| |
|
|| ||||||||| || | ||||| |||||||||| ||||||||| || | ||||||||| ||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
21622923 |
gagatcttcctccaac--ctagtcctattgcatataggattaaatcatcggtcgatatgttgcaatcttctggaaatatagaacacaacaaaaagagcaa |
21622826 |
T |
|
| Q |
642 |
ctctgcttccttgttttgtaaatatgtatagcttagttcaagacaacttaaagc |
695 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
21622825 |
ctctgcttccttgttttgtaaatatttatagcttagttcaagacaactcaaagc |
21622772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 442 - 695
Target Start/End: Complemental strand, 21644737 - 21644486
Alignment:
| Q |
442 |
tgcatcttcacacatttcatgtcttcagcaggcatcagcaaacaagattctacaagtttgtctatggcaacttgaatcaaaatccttgatatcttcagtg |
541 |
Q |
| |
|
||||||||||||| || |||||||| ||| |||||||||||||| ||||||| ||| |||| |||| | |||||| |||| ||||||||| |||||||| |
|
|
| T |
21644737 |
tgcatcttcacacgttgcatgtctttagccggcatcagcaaacatgattctaaaagcttgtttatgccgtcttgaaccaaactccttgataacttcagtg |
21644638 |
T |
|
| Q |
542 |
gatgtcttcctcccacacccagtccaattgcatatatgattaaatcttctattgatatgttgtaatcttctggaaacatagaacacatcaaaaagagcaa |
641 |
Q |
| |
|
|| ||||||||| || | ||||| |||||||||| ||||||||| || | ||||||||| ||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
21644637 |
gagatcttcctccaac--ctagtcctattgcatataggattaaatcatcggtcgatatgttgcaatcttctggaaatatagaacacaacaaaaagagcaa |
21644540 |
T |
|
| Q |
642 |
ctctgcttccttgttttgtaaatatgtatagcttagttcaagacaacttaaagc |
695 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
21644539 |
ctctgcttccttgttttgtaaatatttatagcttagttcaagacaactcaaagc |
21644486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 568 - 695
Target Start/End: Complemental strand, 21596916 - 21596789
Alignment:
| Q |
568 |
attgcatatatgattaaatcttctattgatatgttgtaatcttctggaaacatagaacacatcaaaaagagcaactctgcttccttgttttgtaaatatg |
667 |
Q |
| |
|
|||| ||||||||||||||| || | ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21596916 |
attggatatatgattaaatcgtcggtcgatatgttgcaatcttctggaaacatagaacacaacaaaaagagcaactctgcttccttgttttgtaaatatt |
21596817 |
T |
|
| Q |
668 |
tatagcttagttcaagacaacttaaagc |
695 |
Q |
| |
|
|||||||||||||||||||||| ||||| |
|
|
| T |
21596816 |
tatagcttagttcaagacaactcaaagc |
21596789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 21123779 - 21123709
Alignment:
| Q |
45 |
agaaatgtcacctaacttcaacccattcaagcgcagagttcgaacatttgttaaaaattggattgatggag |
115 |
Q |
| |
|
|||||||||||| || ||||| ||||| ||||||| ||||||||||||| | || | |||||||||||||| |
|
|
| T |
21123779 |
agaaatgtcaccaaagttcaatccatttaagcgcaaagttcgaacatttttcaacagttggattgatggag |
21123709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 21116354 - 21116282
Alignment:
| Q |
43 |
aaagaaatgtcacctaacttcaacccattcaagcgcagagttcgaacatttgttaaaaattggattgatggag |
115 |
Q |
| |
|
|||||||||||| | || ||||| ||||| ||||||| ||||||||||||||| || || ||||| ||||||| |
|
|
| T |
21116354 |
aaagaaatgtcatccaatttcaatccatttaagcgcaaagttcgaacatttgtcaacaactggatggatggag |
21116282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 364 - 422
Target Start/End: Original strand, 23009814 - 23009872
Alignment:
| Q |
364 |
ggtttgtcaacatttaccaaaattttgtgatcctctgacctctttgctatccataaggc |
422 |
Q |
| |
|
||||||||||||||||||| |||||||| || ||||| |||||||| ||||||||||| |
|
|
| T |
23009814 |
ggtttgtcaacatttaccacaattttgttattgtctgatctctttgcaatccataaggc |
23009872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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