View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13261_low_6 (Length: 710)

Name: NF13261_low_6
Description: NF13261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13261_low_6
NF13261_low_6
[»] chr1 (6 HSPs)
chr1 (43-695)||(34502052-34502710)
chr1 (47-615)||(34512822-34513396)
chr1 (299-391)||(34536600-34536694)
chr1 (1-39)||(31866960-31866998)
chr1 (1-40)||(35907534-35907573)
chr1 (1-39)||(44352629-44352667)
[»] chr7 (7 HSPs)
chr7 (503-601)||(3325384-3325483)
chr7 (414-461)||(3325486-3325533)
chr7 (1-40)||(34389202-34389241)
chr7 (1-39)||(7002708-7002746)
chr7 (1-39)||(7048579-7048617)
chr7 (1-39)||(8867877-8867915)
chr7 (5-39)||(37002294-37002328)
[»] chr3 (9 HSPs)
chr3 (1-40)||(6503715-6503754)
chr3 (2-40)||(11018359-11018397)
chr3 (1-39)||(45182964-45183002)
chr3 (4-39)||(33040936-33040971)
chr3 (1-39)||(5354692-5354730)
chr3 (1-39)||(6890981-6891019)
chr3 (1-39)||(6931040-6931078)
chr3 (1-39)||(19565647-19565685)
chr3 (1-39)||(45335858-45335896)
[»] chr4 (11 HSPs)
chr4 (1-40)||(7769310-7769349)
chr4 (1-40)||(43143730-43143769)
chr4 (1-39)||(6212044-6212082)
chr4 (1-39)||(6690381-6690419)
chr4 (1-39)||(10353030-10353068)
chr4 (1-39)||(30216888-30216926)
chr4 (1-39)||(49908798-49908836)
chr4 (1-39)||(50205223-50205261)
chr4 (3-39)||(5517512-5517548)
chr4 (1-39)||(17554979-17555017)
chr4 (1-38)||(50720492-50720529)
[»] chr8 (3 HSPs)
chr8 (1-39)||(23402091-23402129)
chr8 (304-411)||(30145628-30145737)
chr8 (1-39)||(2729342-2729380)
[»] chr6 (3 HSPs)
chr6 (1-39)||(28996713-28996751)
chr6 (1-39)||(13647000-13647038)
chr6 (2-39)||(34385535-34385572)
[»] chr5 (4 HSPs)
chr5 (1-39)||(31680350-31680388)
chr5 (1-39)||(12279006-12279044)
chr5 (1-39)||(17332697-17332735)
chr5 (1-39)||(26543911-26543949)
[»] chr2 (4 HSPs)
chr2 (1-39)||(8147334-8147372)
chr2 (1-39)||(45418566-45418604)
chr2 (1-39)||(34523223-34523261)
chr2 (1-39)||(44084749-44084787)
[»] scaffold0769 (1 HSPs)
scaffold0769 (1-39)||(1260-1298)


Alignment Details
Target: chr1 (Bit Score: 567; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 43 - 695
Target Start/End: Complemental strand, 34502710 - 34502052
Alignment:
Q  43 tatattgctcaatttgatcttattagaagagaatctaagaaaatggtgccaacgtttacgagtgagaggcggaaga---agaaggataaactcagtgaat 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||   |||||||||||| ||||||||    
T  34502710 tatattgctcaatttgatcttattagaagagaatctaagaaaatggcgccaacgtttacgagtgagaggctgaagatgaagaaggataaacacagtgaat 34502611  T
Q  140 tgcctcnnnnnnntatataatgtcatttatgatgataaaagacgtggttaagactaacgtcttatcaaaacgatgggagaatctttagaaacacctcctt 239  Q
    ||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34502610 tgcctcaaaaaaatatataatgtcatttatgatgataaaagacgtggttaagactaacgtcttatcaaaacgatgggagaatctttagaaacacctcctt 34502511  T
Q  240 aatcttaaactaatttcatttgaaatcaacaagctaatgttttttgttgcatcgctgtatctgggattgtgtcatctcgtagtatgggaa--tatccctt 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  34502510 aatcttaaactaatttcatttgaaatcaacaagctaatgttttttgttgcatcgctgtatctgggattgtgtcatctcgtagtatgggaaaatatccctt 34502411  T
Q  338 acatactcttgactttgatcatcgtagtttctttcaacgtaagatat--tcactgatcttataacacatgttgttttccaaggtctcaagaaattgaaag 435  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34502410 acatactcttgactttgatcatcgtagtttctttcaacgtaagatatattcactgatcttataacacatgttgttttccaaggtctcaagaaattgaaag 34502311  T
Q  436 taatagtgtcacccaatcttggtttgtctgattgtatttttatttctcatttaccgacctctcttcatatttatggttcaacttgttatccttgaagaag 535  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34502310 taatagtgtcacccaatattggtttgtctgattgtatttttatttctcatttaccgacctctcttcatatttatggttcaacttgttatccttgaagaag 34502211  T
Q  536 aaatggacctctaagtctctaaatcttcatgctttaacaagtttacatcttgactatgttgggatttaagctataaaaaacatttaagtctctaaccaaa 635  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  34502210 aaatggacctctaagtctcttaatcttcatgctttaacaagtttacatcttgactatgttgggatttaacctataaaaaaca-ttaagtctctaaccaaa 34502112  T
Q  636 atgcacacaatggttttcatataaatcaagcataagtaaaactgataatacatatatgtg 695  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34502111 atgcacacaatggttttcatagaaatcaagcataagtaaaactgataatacatatatgtg 34502052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 47 - 615
Target Start/End: Complemental strand, 34513396 - 34512822
Alignment:
Q  47 ttgctcaatttgatcttattagaagagaatctaagaaaatggtgccaacgtttacgagtgagaggcggaagaagaag---gataaactcagtgaattgcc 143  Q
    ||||| |||||||||||| || |||||||||||||||||||| ||||||||| ||||||||||||| ||||| ||||   || |||| || |||||||||    
T  34513396 ttgctaaatttgatcttactacaagagaatctaagaaaatggcgccaacgttaacgagtgagaggctgaagatgaagacggacaaacacaatgaattgcc 34513297  T
Q  144 tcnnnnnnntata-------taatgtcatttatgatgataaaagacgtggttaagactaacgtcttatcaaaacgatgggagaatctttagaaacacctc 236  Q
             | ||       |||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||         || ||||||||||    
T  34513296 aaaaatagttctactttacataatgtcatttatgatgaaaaaagacgtggttaagactagcatcttatcaaaacgatga--------ttggaaacacctc 34513205  T
Q  237 cttaatcttaaactaatttcatttgaaatcaacaagctaatgttttttgttgcatcgctgtatctgggattgtgtcatctcgtagtatgggaa--tatcc 334  Q
    | | |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||| ||| ||||||||||||||||| |  ||||  |||||    
T  34513204 cctcatcttaaactaatttcatttgaaatcaacaagctaatgttttttgttgcata--tgtatttgg-attgtgtcatctcgtagcaaaggaaaatatcc 34513108  T
Q  335 cttacatactcttgactttgatcatcgtagtttctttcaacgtaagatattcactgatcttataacacatgttgttttccaaggtctcaagaaattgaaa 434  Q
    ||||| ||||||||| ||  |||||||| |||||||||||| ||||||||||| |||||| ||    |||     ||  ||||| |||||||||||||||    
T  34513107 cttacgtactcttgaattctatcatcgttgtttctttcaacataagatattcattgatctcatt---cataacactt--caaggcctcaagaaattgaaa 34513013  T
Q  435 gtaa-----tagtgtcacccaatcttggtttgtctgattgtatttttatttctca-tttaccgacctctcttcatatttatggttcaacttgttatcctt 528  Q
    | ||     || ||||||||||| ||||||||||||||||| ||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||    
T  34513012 gcaacagtgtactgtcacccaatattggtttgtctgattgtgtttttatttatcattttaccgatctctcttcatatttatggttcaacttgttatcctt 34512913  T
Q  529 gaagaagaaatggacc----tctaagtctctaaatcttcatgctttaacaagtttacatcttgactatgttgggatttaagctataaaaaa 615  Q
    ||||||||||||||||    || |||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  34512912 gaagaagaaatggacctcgatcgaagtatcttaatcttcatgctttaacaagtttacgtcttgactatgttgggatttaacctataaaaaa 34512822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 299 - 391
Target Start/End: Original strand, 34536600 - 34536694
Alignment:
Q  299 tctgggattgtgtcatctcgtagtatgggaat--atcccttacatactcttgactttgatcatcgtagtttctttcaacgtaagatattcactga 391  Q
    |||||| | ||||||||||||||||||||||   |||||||||  |||||||||||||||| || | |||  ||||||| |||||||||||||||    
T  34536600 tctggggtcgtgtcatctcgtagtatgggaaatcatcccttacgcactcttgactttgatcgtcatggttgttttcaacataagatattcactga 34536694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 31866998 - 31866960
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  31866998 cgggcgaccgcccggggtcgccgggcggtgaaaccgccc 31866960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 35907573 - 35907534
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccca 40  Q
    |||||||||||||| ||||||||| |||||||||||||||    
T  35907573 cgggcgaccgcccgaggtcgccgggcggtgaaaccgccca 35907534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 44352629 - 44352667
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  44352629 cgggcgacctcccggggtcgccggatggtgaaaccgccc 44352667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 503 - 601
Target Start/End: Complemental strand, 3325483 - 3325384
Alignment:
Q  503 tatttatggttcaacttgttatccttgaagaagaaatggacctct-aagtctctaaatcttcatgctttaacaagtttacatcttgactatgttgggatt 601  Q
    ||||||||||||||||| ||| |||||||||||||||| ||| || |||||||| |||||||||||||||||||||||  ||||||||||||||| ||||    
T  3325483 tatttatggttcaactttttaaccttgaagaagaaatgaaccccttaagtctcttaatcttcatgctttaacaagtttgtatcttgactatgttgagatt 3325384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 414 - 461
Target Start/End: Complemental strand, 3325533 - 3325486
Alignment:
Q  414 caaggtctcaagaaattgaaagtaatagtgtcacccaatcttggtttg 461  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||||    
T  3325533 caaggtctctagaaattgaaagtaacggtgtcacccaatcttggtttg 3325486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 34389202 - 34389241
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccca 40  Q
    |||||||||||||||||||||||| |||||||| ||||||    
T  34389202 cgggcgaccgcccggggtcgccgggcggtgaaatcgccca 34389241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 7002746 - 7002708
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    ||||||||||| |||||||||||| ||||||||||||||    
T  7002746 cgggcgaccgctcggggtcgccgggcggtgaaaccgccc 7002708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 7048617 - 7048579
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    ||||||||||| |||||||||||| ||||||||||||||    
T  7048617 cgggcgaccgctcggggtcgccgggcggtgaaaccgccc 7048579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 8867877 - 8867915
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  8867877 cgggcgaccgcccggggtcgccgggcggtgaaactgccc 8867915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 37002294 - 37002328
Alignment:
Q  5 cgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    |||||||||||||||||||| ||||||||||||||    
T  37002294 cgaccgcccggggtcgccgggcggtgaaaccgccc 37002328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 6503715 - 6503754
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccca 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6503715 cgggcgaccgcccggggtcgccggacggtgaaaccgccca 6503754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 11018359 - 11018397
Alignment:
Q  2 gggcgaccgcccggggtcgccggacggtgaaaccgccca 40  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  11018359 gggcgaccgcccggagtcgccggacggtgaaaccgccca 11018397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 45183002 - 45182964
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  45183002 cgggcgaccgcccggggtcgccgggcggtgaaaccgccc 45182964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 33040971 - 33040936
Alignment:
Q  4 gcgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    ||||||||||||||||||||| ||||||||||||||    
T  33040971 gcgaccgcccggggtcgccgggcggtgaaaccgccc 33040936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 5354730 - 5354692
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  5354730 cgggcgaccgcccggggtcgccgggcggtgaaactgccc 5354692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 6891019 - 6890981
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  6891019 cgggcgaccgcccggtgtcgccgggcggtgaaaccgccc 6890981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 6931040 - 6931078
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  6931040 cgggcgaccgtccggggtcgccgggcggtgaaaccgccc 6931078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 19565647 - 19565685
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    |||||||||||||||| ||||||| ||||||||||||||    
T  19565647 cgggcgaccgcccgggatcgccgggcggtgaaaccgccc 19565685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 45335896 - 45335858
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  45335896 cgggcgaccgcccgaggtcgccgggcggtgaaaccgccc 45335858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 7769349 - 7769310
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccca 40  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  7769349 cgggcgaccgcctggggtcgccggacggtgaaaccgccca 7769310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 43143730 - 43143769
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccca 40  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  43143730 cgggcgaccgcccggggtcgtcggacggtgaaaccgccca 43143769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 6212044 - 6212082
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  6212044 cgggcgaccgcccgaggtcgccggacggtgaaaccgccc 6212082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 6690381 - 6690419
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  6690381 cgggcgaccgcccggggtcgccgggcggtgaaaccgccc 6690419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 10353030 - 10353068
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  10353030 cgggcgaccgccaggggtcgccggacggtgaaaccgccc 10353068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 30216888 - 30216926
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  30216888 cgggcgaccgcccggggtcgccggacggtgaatccgccc 30216926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 49908798 - 49908836
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  49908798 cgggcgaccgcccggggtcgccgggcggtgaaaccgccc 49908836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 50205223 - 50205261
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  50205223 cgggcgaccgcccgggatcgccggacggtgaaaccgccc 50205261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 5517512 - 5517548
Alignment:
Q  3 ggcgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    |||||||||||||||||||||| ||||||||||||||    
T  5517512 ggcgaccgcccggggtcgccgggcggtgaaaccgccc 5517548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 17555017 - 17554979
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  17555017 cgggcgaccacccggggtcgtcggacggtgaaaccgccc 17554979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 50720492 - 50720529
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgcc 38  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  50720492 cgggcgaccgcccgaggtcgccgggcggtgaaaccgcc 50720529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 23402129 - 23402091
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  23402129 cgggcgaccgcccggggtcgccgggcggtgaaaccgccc 23402091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 304 - 411
Target Start/End: Complemental strand, 30145737 - 30145628
Alignment:
Q  304 gattgtgtcatctcgtagtatgggaat--atcccttacatactcttgactttgatcatcgtagtttctttcaacgtaagatattcactgatcttataaca 401  Q
    ||||||||||||| |||||| | |||   ||| |||||||||||||||||   |||| | | |||  ||||||| ||||||||||||| |||| ||||||    
T  30145737 gattgtgtcatcttgtagtaagagaaatcatctcttacatactcttgactccaatcaccattgttcttttcaacataagatattcactcatctcataaca 30145638  T
Q  402 catgttgttt 411  Q
    ||||||||||    
T  30145637 catgttgttt 30145628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 2729342 - 2729380
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  2729342 cgggcgtccgcccggggtcgccgggcggtgaaaccgccc 2729380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 28996751 - 28996713
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  28996751 cgggcgaccgcccggggtcgccgggcggtgaaaccgccc 28996713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 13647038 - 13647000
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  13647038 cgggcgaccgcccggggtcgccgggtggtgaaaccgccc 13647000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 34385535 - 34385572
Alignment:
Q  2 gggcgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  34385535 gggcaaccgcccggggtcgccgggcggtgaaaccgccc 34385572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 31680388 - 31680350
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  31680388 cgggcgaccgcccggggtcgccgggcggtgaaaccgccc 31680350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 12279006 - 12279044
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    |||||||||||||||| ||||||| ||||||||||||||    
T  12279006 cgggcgaccgcccgggatcgccgggcggtgaaaccgccc 12279044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 17332697 - 17332735
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  17332697 cgggcgaacgcccggggtcgccgggcggtgaaaccgccc 17332735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 26543911 - 26543949
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  26543911 cgggcgaccgcccggggtcgccgggcggtaaaaccgccc 26543949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 8147372 - 8147334
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  8147372 cgggcgaccgcccggggtcgccgggcggtgaaaccgccc 8147334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 45418604 - 45418566
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  45418604 cgggcgaccgcccggggtcgccgggcggtgaaaccgccc 45418566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 34523261 - 34523223
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  34523261 cgggcgaccgcccggggtcgccgggcggtaaaaccgccc 34523223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 44084749 - 44084787
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  44084749 cgggcgactgcccggggtcgccgggcggtgaaaccgccc 44084787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 1298 - 1260
Alignment:
Q  1 cgggcgaccgcccggggtcgccggacggtgaaaccgccc 39  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  1298 cgggcgaccgcccggggtcgccgggcggtaaaaccgccc 1260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University