View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13261_low_8 (Length: 575)
Name: NF13261_low_8
Description: NF13261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13261_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 9 - 276
Target Start/End: Original strand, 7265974 - 7266240
Alignment:
| Q |
9 |
gataatacttcaagcagaacaacaactttgataaaggtttgaaatttaaaacttttaagattttaatcttttgatgaatttcaaaagggtcattttagtt |
108 |
Q |
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| T |
7265974 |
gataatacttcaagcagaacaacaactttgataaaggtttgaaatttaaaccttataagattttaatcttt-gatgaaattcaaaagggtcattttagtt |
7266072 |
T |
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| Q |
109 |
tagtttataaataattttcatgtgaattttgtgtaggttgatagtgctaataaacgtggtagtttgttggaagttgttcaagttcttactgatatgaatc |
208 |
Q |
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| T |
7266073 |
tagtttataaataattttcatgtgaattttgtgtaggttgatagtgctaataaacgtggtagtttgttggaagttgttcaagttcttactgatatgaatc |
7266172 |
T |
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| Q |
209 |
tcattgttagaagagcttatatttcatctgatggtggatggtttatggatggtatgccatacctacca |
276 |
Q |
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| T |
7266173 |
tcattgttagaagagcttatatttcatctgatggtggatggtttatggatggtatgctatacctacca |
7266240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 424 - 559
Target Start/End: Original strand, 7266389 - 7266524
Alignment:
| Q |
424 |
actgatcaaaatgggaaaaagattcttcaagaagatgttgctgatagaattcaacaggtaatagatctgtgtaatattcatcggacattagtttttgatt |
523 |
Q |
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| T |
7266389 |
actgatcaaaatgggaaaaagattcttcaagaagatgttgctgatagaattcaacaggtaatagatctgtgtaatattcatcggacattagtttttgatt |
7266488 |
T |
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| Q |
524 |
ttacatttgttatgattgtaatttaggagtgaaatt |
559 |
Q |
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| T |
7266489 |
ttacatttgttatgattgtaatttaggagtgaaatt |
7266524 |
T |
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