View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13261_low_9 (Length: 572)
Name: NF13261_low_9
Description: NF13261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13261_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 1 - 549
Target Start/End: Original strand, 45865645 - 45866193
Alignment:
| Q |
1 |
aaatgtaaattatcaaaatgaacaatgtcatgtcaacgataataacttattcaatttcaaatctaaaatccgtagatatacaaacctctggagctgcata |
100 |
Q |
| |
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| T |
45865645 |
aaatgtaaattatcaaaatgaacaatgtcatgtcaacaataataacttattcaatttcaaatctaaaatccgtagatatacaaacctctggagctgcata |
45865744 |
T |
|
| Q |
101 |
gttagggctcccacaacttgtcttaagtaagtgaccatcacgcatgatgttgctcaagccaaaatcagcaattttgacactcttttttgagtccaaaagt |
200 |
Q |
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||||||||| ||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45865745 |
gttagggcttccacaacttgtattaagtaagtgaccatcacgcatgttgctgctcaagccaaaatcagcaattttgacactcttttttgagtccaaaagt |
45865844 |
T |
|
| Q |
201 |
atattttcaggtttcaggtctctatgagctaccatagtcttgtgacagtactccacaccagagattatctgatttcaatatagaagtaagcttaaatatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45865845 |
atattttcaggtttcaggtctctatgagctaccatagtcttgtgacagtactccacaccagagattatctgatttcaatatagaagtaagcttaaatatt |
45865944 |
T |
|
| Q |
301 |
ttgtcgaagtatacgcttctcaactactcaaaacagaagaaattatacctgctggaagaatgtgcgagcttcgttttcttgcaacctacccttttgtgct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45865945 |
ttgtcgaagtatacgcttctcaactactcaaaacagaagaaattatacctgctggaagaatgtgcgagcttcgttttcttgcaacctacccttttgtgct |
45866044 |
T |
|
| Q |
401 |
atgtagtcaaagaactctccattttccgcatattccatcaccatatatatgtctgttgaggtttctacaacctcataaaggcgtatgacgtgatgatgca |
500 |
Q |
| |
|
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| T |
45866045 |
atgtagtcaaagagatctccattttccgcatattccatcaccatatatatgtctgttgaggtttctacaacctcataaaggcgtataacgtgatgatgca |
45866144 |
T |
|
| Q |
501 |
tgaacatttttaaaatttctatttctcttctaactgcaacatattgaag |
549 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45866145 |
tgaacatttttaaaatttctatttctcttctaactgcaacatattgaag |
45866193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 58 - 551
Target Start/End: Complemental strand, 17404605 - 17404113
Alignment:
| Q |
58 |
caaatctaaaatccgtagatatacaaacctctggagctgcatagttagggctcccacaacttgtcttaagtaagtgaccatcacgcatgatgttgctcaa |
157 |
Q |
| |
|
||||| ||||||| |||||| ||||||||||||||||||||||||| ||||| || |||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
17404605 |
caaatttaaaatctgtagatgtacaaacctctggagctgcatagttggggcttccgcaacttgtcttaagaaagtgaccatcacgcatgatgttgctcag |
17404506 |
T |
|
| Q |
158 |
gccaaaatcagcaattttgacactcttttttgagtccaaaagtatattttcaggtttcaggtctctatgagctaccatagtcttgtgacagtactccaca |
257 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||| |||||| |||||||||||||||||| |||||||| || | |||||||| |||| | |
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|
| T |
17404505 |
gccaaaatcagcaatcttgacactccattttgagtccaaaagtaaattttcgggtttcaggtctctatgaactaccatattcctatgacagtaatccaaa |
17404406 |
T |
|
| Q |
258 |
ccagagattatctgatttcaatatagaagtaagcttaaatattttgt-cgaagtatacgcttctcaactactcaaaacagaagaaattatacctgctgga |
356 |
Q |
| |
|
||||| || |||| | ||| ||||||| |||||||||||| ||| ||||||| ||||||||| | || |||| ||| |||||||||||||||| |
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| T |
17404405 |
ccagaaataatctacatacaaagtagaagttagcttaaatattctgtgacaagtataagcttctcaa--gcgcacaacaaaagtaattatacctgctgga |
17404308 |
T |
|
| Q |
357 |
agaatgtgcgagcttcgttttcttgcaacctacccttttgtgctatgtagtcaaagaactctccattttccgcatattccatcaccatatatatgtctgt |
456 |
Q |
| |
|
|||| |||||||||| | |||||| | ||||||||||| | ||||||| ||||| | |||||| || | |||| |||||||||| ||| || || || |
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|
| T |
17404307 |
agaaactgcgagcttcatcttcttgaagcctacccttttctactatgtaatcaaaaagttctccagatttcacatactccatcaccacataaatatcagt |
17404208 |
T |
|
| Q |
457 |
tgaggtttctacaacctcataaaggcgtatgacgtgatgatgcatgaacatttttaaaatttctatttctcttctaactgcaacatattgaagaa |
551 |
Q |
| |
|
|| ||||||||||||||| ||||||||||| | ||| ||||||||||||| | ||||||||| |||||| ||||||||||||||| ||||||||| |
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|
| T |
17404207 |
tggggtttctacaacctcgtaaaggcgtataatgtggtgatgcatgaacaatcttaaaatttttatttcccttctaactgcaacaaattgaagaa |
17404113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 33 - 551
Target Start/End: Original strand, 4054433 - 4054950
Alignment:
| Q |
33 |
tcaacgataataacttattcaatttcaaatctaaaatccgtagatatacaaacctctggagctgcatagttagggctcccacaacttgtcttaagtaagt |
132 |
Q |
| |
|
||||| |||||||||| ||||||| |||| ||||||||||||| | |||||||| |||||||||||||||||||| ||||||||||||||||| |||| |
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|
| T |
4054433 |
tcaaccataataacttgttcaatta-aaatttaaaatccgtagacgtgcaaacctcgggagctgcatagttagggcttccacaacttgtcttaagaaagt |
4054531 |
T |
|
| Q |
133 |
gaccatcacgcatgatgttgctcaagccaaaatcagcaattttgacactcttttttgagtccaaaagtatattttcaggtttcaggtctctatgagctac |
232 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||| ||| ||||| |||| |||||||||| |||| |
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|
| T |
4054532 |
ggccatcacgcatgatgttgctcaggccaaaatcagcaatcttgacactccattttgagtccaaaagtaaattctcaggcttcaagtctctatgaactac |
4054631 |
T |
|
| Q |
233 |
catagtcttgtgacagtactccacaccagagattatctgatttcaatatagaagtaagcttaaatattttgt-cgaagtatacgcttctcaactactcaa |
331 |
Q |
| |
|
|||| || | |||||||| ||||||||||| |||||||| ||||| ||||||| || ||||||| | | | ||||||| ||||||||| || ||| |
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|
| T |
4054632 |
catattcctatgacagtattccacaccagatattatctgcattcaaagtagaagttagattaaatactctatgacaagtataagcttctcaagtatgcaa |
4054731 |
T |
|
| Q |
332 |
aacagaagaaattatacctgctggaagaatgtgcgagcttcgttttcttgcaacctacccttttgtgctatgtagtcaaagaactctccattttccgcat |
431 |
Q |
| |
|
|| | ||| |||||||||||||||||||| |||| ||||| | |||||| | ||||||||||| | | ||||| ||||||| |||||| || | ||| |
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|
| T |
4054732 |
aa-aaaagtaattatacctgctggaagaaactgcgggcttcatcttcttgtagcctacccttttctacaatgtaatcaaagagctctccggatttcacat |
4054830 |
T |
|
| Q |
432 |
attccatcaccatatatatgtctgttgaggtttctacaacctcataaaggcgtatgacgtgatgatgcatgaacatttttaaaatttctatttctcttct |
531 |
Q |
| |
|
| |||||||| | ||| |||||||| | |||||| |||||||||||||||||||||| |||||| |||||||||| | ||||||| | ||||||||||| |
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|
| T |
4054831 |
actccatcacaacataaatgtctgtaggggtttccacaacctcataaaggcgtatgatgtgatggtgcatgaacaatcttaaaatcttaatttctcttct |
4054930 |
T |
|
| Q |
532 |
aactgcaacatattgaagaa |
551 |
Q |
| |
|
||||||||| ||||||||| |
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|
| T |
4054931 |
cactgcaacagattgaagaa |
4054950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 78 - 274
Target Start/End: Original strand, 4046008 - 4046204
Alignment:
| Q |
78 |
atacaaacctctggagctgcatagttagggctcccacaacttgtcttaagtaagtgaccatcacgcatgatgttgctcaagccaaaatcagcaattttga |
177 |
Q |
| |
|
||||||||||| ||||||||||||||| | || ||||| |||||||||||||| ||||||| |||| ||||||||||||||||||||| ||| |||| |
|
|
| T |
4046008 |
atacaaacctcaggagctgcatagttaagacttccacatcttgtcttaagtaactgaccatgttgcattgtgttgctcaagccaaaatcagtaatcttga |
4046107 |
T |
|
| Q |
178 |
cactcttttttgagtccaaaagtatattttcaggtttcaggtctctatgagctaccatagtcttgtgacagtactccacaccagagattatctgatt |
274 |
Q |
| |
|
| | ||||||||||||||||||| ||||||| || | |||||||||||| |||||| | |||||||| | || || || |||||||||||||| |
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|
| T |
4046108 |
tattgaattttgagtccaaaagtatagtttcaggctttaagtctctatgagccaccatattgttgtgacaatgctgtaccccggagattatctgatt |
4046204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 392 - 551
Target Start/End: Complemental strand, 17968003 - 17967847
Alignment:
| Q |
392 |
ttttgtgctatgtagtcaaagaactctccattttccgcatattccatcaccatatatatgtctgttgaggtttctacaacctcataaaggcgtatgacgt |
491 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| ||||||||||||||||||| | |||||||||||| |||||||| ||||| ||||||||||| | || |
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|
| T |
17968003 |
ttttgtactatgtagtcaaagagctctccatgttccgcatattccatcacc--acatatgtctgttggggtttctagaaccttataaaggcgta-catgt |
17967907 |
T |
|
| Q |
492 |
gatgatgcatgaacatttttaaaatttctatttctcttctaactgcaacatattgaagaa |
551 |
Q |
| |
|
||||||||||| | |||||||||| | ||||||||||| ||||||||| ||||||||| |
|
|
| T |
17967906 |
gatgatgcatgcatatttttaaaaggttaatttctcttctcactgcaacagattgaagaa |
17967847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 392 - 511
Target Start/End: Original strand, 17966756 - 17966875
Alignment:
| Q |
392 |
ttttgtgctatgtagtcaaagaactctccattttccgcatattccatcaccatatatatgtctgttgaggtttctacaacctcataaaggcgtatgacgt |
491 |
Q |
| |
|
|||||| ||||||||||||||| | |||||| |||| ||||||| ||||||| |||||||| ||||| || |||||||||||||||||| ||||| | || |
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|
| T |
17966756 |
ttttgtactatgtagtcaaagagcactccatgttccacatattcaatcaccacatatatgtatgttggggattctacaacctcataaagtcgtataatgt |
17966855 |
T |
|
| Q |
492 |
gatgatgcatgaacattttt |
511 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
17966856 |
gatgatgcatgaacaatttt |
17966875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 111 - 209
Target Start/End: Complemental strand, 4125173 - 4125075
Alignment:
| Q |
111 |
ccacaacttgtcttaagtaagtgaccatcacgcatgatgttgctcaagccaaaatcagcaattttgacactcttttttgagtccaaaagtatattttca |
209 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||| ||||||||||||||||||||| ||| |||||| | ||||||||||||||||||| ||||| |
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|
| T |
4125173 |
ccacaacttgtcttaagtaactgaccatgttgcattgtgttgctcaagccaaaatcagtaatcttgacattaaattttgagtccaaaagtatagtttca |
4125075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 208
Target Start/End: Complemental strand, 4105723 - 4105593
Alignment:
| Q |
79 |
tacaaacctctggagctgcatagttagggctcccacaactt-gtcttaagtaagtgaccatcacgcatgatgttgctcaagccaaaatcagcaattttga |
177 |
Q |
| |
|
||||||||||| |||||||||||||| | || |||||||| ||||||||||| || ||| |||| ||||||| |||||||||| || ||| |||| |
|
|
| T |
4105723 |
tacaaacctctagagctgcatagttaagactttcacaactttgtcttaagtaaccgatcatgctgcattgtgttgctaaagccaaaattagtaatcttga |
4105624 |
T |
|
| Q |
178 |
cactcttttttgagtccaaaagtatattttc |
208 |
Q |
| |
|
|| | ||||||||||||||||||| |||| |
|
|
| T |
4105623 |
cattgaattttgagtccaaaagtatagtttc |
4105593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 551
Target Start/End: Original strand, 4046305 - 4046513
Alignment:
| Q |
343 |
ttatacctgctggaagaatgtgcgagcttcgttttcttgcaacctacccttttgtgctatgtagtcaaagaactctccattttccgcatattccatcacc |
442 |
Q |
| |
|
|||||||||||| || ||| |||| ||||| | ||| |||||||||||||||| | ||||||| ||||| | ||| ||| |||| ||| ||||| | |
|
|
| T |
4046305 |
ttatacctgctgaaaaaatttgcgcgcttcatcttcgtgcaacctacccttttctactatgtaatcaaaaagctccccagattccatatactccataata |
4046404 |
T |
|
| Q |
443 |
atatatatgtctgttgaggtttctacaacctcataaaggcgtatgacgtgatgatgcatgaacatttttaaaatttctatttctcttctaactgcaacat |
542 |
Q |
| |
|
| |||||| | ||| |||||||| |||||||||| |||| | |||| ||||| | |||| ||||||| | | ||||||||||| ||||||||| |
|
|
| T |
4046405 |
acatatatattcgttagggtttctatcacctcataaacttgtataatgtgaggatgccttaacaattttaaagtattaatttctcttcttactgcaacaa |
4046504 |
T |
|
| Q |
543 |
attgaagaa |
551 |
Q |
| |
|
||||||||| |
|
|
| T |
4046505 |
attgaagaa |
4046513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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