View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13262_high_1 (Length: 802)
Name: NF13262_high_1
Description: NF13262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13262_high_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 757; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 757; E-Value: 0
Query Start/End: Original strand, 18 - 794
Target Start/End: Original strand, 38696934 - 38697710
Alignment:
| Q |
18 |
aagttaataaaccacggttattcttcaacctcttatagtacatgttgtccaaatcattaggcgtggaaccatcaaacgccactgttgagtctaggttctg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38696934 |
aagttaataaaccacggttattcttcaacctcttatagtacatgttgtccaaatcattaggcgtggaaccatcaaacgccactgttgagtctaggttctg |
38697033 |
T |
|
| Q |
118 |
tatctgtgactgtgattgttgtgactgtggtggcggacacttggatctcaacaacctagcaaagtcagggtccatagaaggatcttgaggaaaagttgca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38697034 |
tatctgtgactgtgattgttgtgactgtggtggcggacacttggatctcaacaacctagcaaagtcagggtccatagaaggatcttgaggaaaagttgca |
38697133 |
T |
|
| Q |
218 |
ttgaaagagtataatcgttttgagaatgaagaacaatgtgagacaccaatagaatgagcaccagaaagtgtaaccatttcatctactgacaaaccttttc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38697134 |
ttgaaagagtataatcgttttgagaatgaagaacaatgtgagacaccaatagaatgagcaccagaaagtgtaaccatttcatctactgacaaaccttttc |
38697233 |
T |
|
| Q |
318 |
tatcaaaattatcgataagttgctccgcactgaaagttggtggtggtaaattttgtgtgacttcgtcgaagatagacactcgaccatctctgcgtcctgt |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38697234 |
tatcaaaattatcgataagttgctccgcactgaaagttggtggtggtaaattttgtgtgacttcgtcgaagatagacactcgaccatctctgcgtcctga |
38697333 |
T |
|
| Q |
418 |
tggtactgagtagtctattctgtcgccactaactttgcgagcaccgtctcgagctgcaaaagcaagaatgtctgcacaggacaccgttttgggacatgca |
517 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38697334 |
tggtactgagtagtctattctgccgccactaactttgcgagcactgtctcgagctgcaaaagcaagaatgtctgcacaggacaccgttttaggacatgca |
38697433 |
T |
|
| Q |
518 |
gcctctatttgtgccttagcttcgttgattacttcaaagccacgtaaacttggattgtttgcaggatggtctctctcagatcgaatacctggtatggaat |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38697434 |
gcctctatttgtgccttagcttcgttgattacttcaaagccacgtaaacttggattgtttgcaggatggtctctctcagatcgaatacctggtatggaat |
38697533 |
T |
|
| Q |
618 |
ctaataaaacagaaccatcacatcctctgacaaagcaatcatgaaaatgcattctaatcaaaccagcagcgatgccggggttgagtgaaacagctttgtt |
717 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
38697534 |
ctaataaaacagaaccatcacatcctctgacaaagcaatcatgaaaatgcattctaatcaaaccagcagtgatgccggggttgagtgaaacagctttgtt |
38697633 |
T |
|
| Q |
718 |
tacagctcttctaacaattgcctccgcggatggacatgttgtcttgtagaaaccatacttcaaagatgttgatgatg |
794 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38697634 |
tacagctcttctaacaattgcctccgcggatggacatgttgtcttgtagaaaccatacttcaaagatgttgatgatg |
38697710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 18 - 794
Target Start/End: Complemental strand, 38629326 - 38628571
Alignment:
| Q |
18 |
aagttaataaaccacggttattcttcaacctcttatagtacatgttgtccaaatcattaggcgtggaaccatcaaacgccactgttgagtctaggttctg |
117 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||| |||| || || | |||| |
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|
| T |
38629326 |
aagttaataaaccacgattattcttcaacctcttatagtacatgttgtccaaatcattaggcgtgctaccatcaagcaccacagttgggtttatgctctg |
38629227 |
T |
|
| Q |
118 |
tatctgtgactgtgattgttgtgactgtggtggcggacacttggatctcaacaacctagcaaagtcagggtccatagaaggatcttgaggaaaagttgca |
217 |
Q |
| |
|
|||||||||||| |||||||| ||| | |||||||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
38629226 |
---------------------tgactgtggtggtggacacttagattttaacaacctagcaaagttagggtccatagaaggatcttgaggaaaagttaaa |
38629148 |
T |
|
| Q |
218 |
ttgaaagagtataatcgttttgagaatgaagaacaatgtgagacaccaatagaatgagcaccagaaagtgtaaccatttcatctactgacaaaccttttc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38629147 |
ttgaaagagtataatcgttttgagaatgaagaacaatgtgagacaccaatagaatgagcaccagaaagtgtaaccatttcatctactgacaaaccttttc |
38629048 |
T |
|
| Q |
318 |
tatcaaaattatcgataagttgctccgcactgaaagttggtggtggtaaattttgtgtgacttcgtcgaagatagacactcgaccatctctgcgtcctgt |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38629047 |
tatcaaaattatcgataagttgctccgcactgaaagttggtggtggtaaattttgtgtgacttcgtcgaagatagacactcgaccatctctgcgtcctga |
38628948 |
T |
|
| Q |
418 |
tggtactgagtagtctattctgtcgccactaactttgcgagcaccgtctcgagctgcaaaagcaagaatgtctgcacaggacaccgttttgggacatgca |
517 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38628947 |
tggtactgagtagtctattctgccgccactaactttgcgagcactgtctcgagctgcaaaagcaagaatgtctgcacaggacaccgttttaggacatgca |
38628848 |
T |
|
| Q |
518 |
gcctctatttgtgccttagcttcgttgattacttcaaagccacgtaaacttggattgtttgcaggatggtctctctcagatcgaatacctggtatggaat |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38628847 |
gcctctatttgtgccttagcttcgttgattacttcaaagccacgtaaacttggattgtttgcaggatggtctctctcagattgaatacctggtatggaat |
38628748 |
T |
|
| Q |
618 |
ctaataaaacagaaccatcacatcctctgacaaagcaatcatgaaaatgcattctaatcaaaccagcagcgatgccggggttgagtgaaacagctttgtt |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38628747 |
ctaataaaacagaaccatcacatcctctgacaaagcaatcatgaaaatgcattctaatcaaaccagcagcgatgccggggttgagtgaaacagctttgtt |
38628648 |
T |
|
| Q |
718 |
tacagctcttctaacaattgcctccgcggatggacatgttgtcttgtagaaaccatacttcaaagatgttgatgatg |
794 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38628647 |
tacagctcttctaacaattgcctctacggatgaacatgttgtcttgtagaaaccatacttcaaagatgtcgatgatg |
38628571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 647 - 755
Target Start/End: Complemental strand, 14256401 - 14256293
Alignment:
| Q |
647 |
acaaagcaatcatgaaaatgcattctaatcaaaccagcagcgatgccggggttgagtgaaacagctttgtttacagctcttctaacaattgcctccgcgg |
746 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| | || || || ||||||||||||||||||| | || ||||| || |||||||| || | |
|
|
| T |
14256401 |
acaaagcaatcatgaaaatgcattctaatcaatccagcacctataccaggattgagtgaaacagctttgtcaattgcacttctcactattgcctcagcag |
14256302 |
T |
|
| Q |
747 |
atggacatg |
755 |
Q |
| |
|
||||||||| |
|
|
| T |
14256301 |
atggacatg |
14256293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 184 - 316
Target Start/End: Complemental strand, 14257671 - 14257539
Alignment:
| Q |
184 |
agggtccatagaaggatcttgaggaaaagttgcattgaaagagtataatcgttttgagaatgaagaacaatgtgagacaccaatagaatgagcaccagaa |
283 |
Q |
| |
|
||||||||||||||||||||||| || || || | || || ||||| || || ||||| |||||||||||||| |||||||| ||||| || || || |
|
|
| T |
14257671 |
agggtccatagaaggatcttgagaaattgtatcactaaatgaatataaacgattagagaaagaagaacaatgtgatacaccaattgaatgtgctcctgag |
14257572 |
T |
|
| Q |
284 |
agtgtaaccatttcatctactgacaaacctttt |
316 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| |
|
|
| T |
14257571 |
agtgtaaccatttcatcaattgacaaacctttt |
14257539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 186 - 539
Target Start/End: Original strand, 30651979 - 30652335
Alignment:
| Q |
186 |
ggtccatagaaggatcttgaggaaaagttgcattgaaagagtataatcgttttgagaatgaagaacaatgtgagacaccaatagaatgagcaccagaaag |
285 |
Q |
| |
|
||||||| | ||||||||||| ||| ||| || ||||||||||||| | |||||||| ||||||||| ||||| ||||||||| |||| || ||||| |
|
|
| T |
30651979 |
ggtccattggaggatcttgagaaaaggtttcaatgaaagagtataaccaatttgagaa---agaacaatgcgagactccaatagaacgagctccggaaag |
30652075 |
T |
|
| Q |
286 |
tgtaacca-------tttcatctactgacaaaccttttctatcaaaattatcgataagttgctccgcactgaaagttggtggtggtaaattttgtgtgac |
378 |
Q |
| |
|
|||||||| ||||||| || ||| |||||||||| ||||| || |||||||| || | | || || | | ||||| ||||||||| | |
|
|
| T |
30652076 |
tgtaaccatttcaattttcatccgctaacagaccttttctagcaaaacgattgataagttcctacacgttggaatatcacgatggtagattttgtgttgc |
30652175 |
T |
|
| Q |
379 |
ttcgtcgaagatagacactcgaccatctctgcgtcctgttggtactgagtagtctattctgtcgccactaactttgcgagcaccgtctcgagctgcaaaa |
478 |
Q |
| |
|
|||||| |||||||| |||||||||||| || ||| || ||||||||||||||| | |||||||||||||||| || |||||||||| |||| |
|
|
| T |
30652176 |
ttcgtcaaagatagaggttcgaccatctctatgtactgatgctactgagtagtctatgtcgctaccactaactttgcgagtactgtctcgagcttgaaaa |
30652275 |
T |
|
| Q |
479 |
gcaagaatgtctgcacaggacaccgttttgggacatgcagcctctatttgtgccttagctt |
539 |
Q |
| |
|
||||||||||||||| | || ||||| |||||||| ||||||||||||| |||||||| |
|
|
| T |
30652276 |
-aaagaatgtctgcacacaagacagttttaggacatgcggcctctatttgtgtcttagctt |
30652335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 20516639 - 20516587
Alignment:
| Q |
38 |
ttcttcaacctcttatagtacatgttgtccaaatcattaggcgtggaaccatc |
90 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20516639 |
ttcttcaacctcttatagtacatgttgtccaaatcaataggcgtggaaccatc |
20516587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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