View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13262_high_12 (Length: 431)
Name: NF13262_high_12
Description: NF13262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13262_high_12 |
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| [»] scaffold0184 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 412
Target Start/End: Complemental strand, 13659056 - 13658663
Alignment:
| Q |
19 |
aaagggcaaaattcacatcttatggggtagtagaccttatatactcaagcaaatcttgaaagctgttgtaggaggaaccaccaggactcacactcttgga |
118 |
Q |
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|||||| ||||||||||||||||||| |||||||||||||||| | || |||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
13659056 |
aaagggaaaaattcacatcttatgggctagtagaccttatatattgaattaaatcttggaagttgttgtaggaggaaccaccaggactcacactcttgga |
13658957 |
T |
|
| Q |
119 |
tgccaacttagccatatccattgctgatctaacaaactcctccttcctattcaccataacatcattcaccatattctccacaacctttctatcacaaaca |
218 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
13658956 |
tgccaacttagctatatccattgctgatctaacaaactcctccttcctattcaccataacatcattcaccatattctccacaaccttcctatcacaaaca |
13658857 |
T |
|
| Q |
219 |
tccttcatatccaatccaagcttccaaacctcactcacaaatctactattaatttgttgatcagcaaaataaggccaacaaatcataggcacaccacaaa |
318 |
Q |
| |
|
|| ||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
13658856 |
tctttcatatccaacccaagtttccaaacatcactcacaaacctactattaatttgttgatcagcaaaataaggccaacatatcataggcacaccacaaa |
13658757 |
T |
|
| Q |
319 |
ccacactctccaaagtagaattccatccactatgtgtcaaaaaggcaccaattgctttgtgtgataaaacttcctcttgtggaacccaccccac |
412 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
13658756 |
ccacactctccaaagtagaattccatccactatgtgtcaaaaaggcaccaattgctttgtgtgacaaaacttcctcttgtggaacccaccccac |
13658663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 46 - 409
Target Start/End: Complemental strand, 13648501 - 13648138
Alignment:
| Q |
46 |
tagtagaccttatatactcaagcaaatcttgaaagctgttgtaggaggaaccaccaggactcacactcttggatgccaacttagccatatccattgctga |
145 |
Q |
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|||||||||||||||| | || |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
13648501 |
tagtagaccttatatattgaattaaatcttggaagttgttgtaggaggaaccaccaggactcacactcttggatgccaacttagctatatccattgctga |
13648402 |
T |
|
| Q |
146 |
tctaacaaactcctccttcctattcaccataacatcattcaccatattctccacaacctttctatcacaaacatccttcatatccaatccaagcttccaa |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| |||||| |
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| T |
13648401 |
tctaacaaactcctccttcctattcaccataacatcattcaccatattctccacaaccttcctatcacaaacatctttcatatccaacccaagtttccaa |
13648302 |
T |
|
| Q |
246 |
acctcactcacaaatctactattaatttgttgatcagcaaaataaggccaacaaatcataggcacaccacaaaccacactctccaaagtagaattccatc |
345 |
Q |
| |
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|| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| | |
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| T |
13648301 |
acatcactcacaaacctactattaatttgttgatcagcaaaataaggccaacatatcataggcacaccacaaaccacactttccaaagttgaattccacc |
13648202 |
T |
|
| Q |
346 |
cactatgtgtcaaaaaggcaccaattgctttgtgtgataaaacttcctcttgtggaacccaccc |
409 |
Q |
| |
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|| ||||||||||||| ||||||||||| || ||||| ||||||||||||||||| |||||||| |
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|
| T |
13648201 |
cattatgtgtcaaaaaagcaccaattgccttatgtgacaaaacttcctcttgtgggacccaccc |
13648138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 38 - 412
Target Start/End: Complemental strand, 13653564 - 13653190
Alignment:
| Q |
38 |
ttatggggtagtagaccttatatactcaagcaaatcttgaaagctgttgtaggaggaaccaccaggactcacactcttggatgccaacttagccatatcc |
137 |
Q |
| |
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||||||| |||||||||||||||||| || ||||||||| | | ||||||||||||||||| ||||| | ||||||||||| ||||| | ||||| | |
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| T |
13653564 |
ttatgggctagtagaccttatatactgaatcaaatcttggaggttgttgtaggaggaaccatcaggatttacactcttggaagccaaatccgccatttta |
13653465 |
T |
|
| Q |
138 |
attgctgatctaacaaactcctccttcctattcaccataacatcattcaccatattctccacaacctttctatcacaaacatccttcatatccaatccaa |
237 |
Q |
| |
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| || ||| | ||||||||||||| | |||||||||| |||||||||||||||||| ||||| || |||||||||||||| |||||||||||||||| |
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| T |
13653464 |
gtagcagattttgaaaactcctccttcttgttcaccataatatcattcaccatattctcaacaacattcctatcacaaacatctttcatatccaatccaa |
13653365 |
T |
|
| Q |
238 |
gcttccaaacctcactcacaaatctactattaatttgttgatcagcaaaataaggccaacaaatcataggcacaccacaaaccacactctccaaagtaga |
337 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13653364 |
gcttccaaacctcactcacaaacctactattaagcggttgatcagaaaaataaggccaacaaatcataggcacaccacaaaccacactctccaaagtaga |
13653265 |
T |
|
| Q |
338 |
attccatccactatgtgtcaaaaaggcaccaattgctttgtgtgataaaacttcctcttgtggaacccaccccac |
412 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||| || ||||| |||||||||||||||||| ||||| |||| |
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| T |
13653264 |
attccatccactatgtgtcaaaaaagcaccaattgccttatgtgacaaaacttcctcttgtggagcccactccac |
13653190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 257 - 361
Target Start/End: Original strand, 26672098 - 26672202
Alignment:
| Q |
257 |
aaatctactattaatttgttgatcagcaaaataaggccaacaaatcataggcacaccacaaaccacactctccaaagtagaattccatccactatgtgtc |
356 |
Q |
| |
|
|||||||| |||| ||||||| ||||||||| |||||||||| ||||| || ||||||| | ||||| ||||| || |||||||| ||| |||||||| |
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|
| T |
26672098 |
aaatctacaattagtttgttgttcagcaaaaaaaggccaacatatcattggaacaccaccacaaacactttccaacgttgaattccaaccattatgtgtc |
26672197 |
T |
|
| Q |
357 |
aaaaa |
361 |
Q |
| |
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||||| |
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| T |
26672198 |
aaaaa |
26672202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 257 - 361
Target Start/End: Original strand, 26901384 - 26901488
Alignment:
| Q |
257 |
aaatctactattaatttgttgatcagcaaaataaggccaacaaatcataggcacaccacaaaccacactctccaaagtagaattccatccactatgtgtc |
356 |
Q |
| |
|
|||||||| |||| ||||||| ||||||||| |||||||||| ||||| || ||||||| | ||||| || || || |||||||| |||||||||||| |
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| T |
26901384 |
aaatctacaattagtttgttgttcagcaaaaaaaggccaacatatcattggaacaccaccacaaacactttctaacgttgaattccaaccactatgtgtc |
26901483 |
T |
|
| Q |
357 |
aaaaa |
361 |
Q |
| |
|
||||| |
|
|
| T |
26901484 |
aaaaa |
26901488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 257 - 361
Target Start/End: Original strand, 26943696 - 26943800
Alignment:
| Q |
257 |
aaatctactattaatttgttgatcagcaaaataaggccaacaaatcataggcacaccacaaaccacactctccaaagtagaattccatccactatgtgtc |
356 |
Q |
| |
|
|||||||| |||| ||||||| ||||||||| |||||||||| ||||| || ||||||| | ||||| ||||| || |||||||| ||| |||||||| |
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|
| T |
26943696 |
aaatctacaattagtttgttgttcagcaaaaaaaggccaacatatcattggaacaccaccacaaacactttccaacgttgaattccaaccattatgtgtc |
26943795 |
T |
|
| Q |
357 |
aaaaa |
361 |
Q |
| |
|
||||| |
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|
| T |
26943796 |
aaaaa |
26943800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 20156862 - 20156908
Alignment:
| Q |
336 |
gaattccatccactatgtgtcaaaaaggcaccaattgctttgtgtga |
382 |
Q |
| |
|
||||||||||||| |||||||||||| ||||| |||||||| ||||| |
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|
| T |
20156862 |
gaattccatccacaatgtgtcaaaaatgcacctattgctttatgtga |
20156908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 372
Target Start/End: Original strand, 11580 - 11686
Alignment:
| Q |
266 |
attaatttgttgatcagcaaaataaggccaacaaatcataggcacaccacaaaccacactctccaaagtagaattccatccactatgtgtcaaaaaggca |
365 |
Q |
| |
|
|||||||| ||| |||||||| |||||||| ||||||||||||||| | || |||||||| | | |||||||| |||| ||| |||||||| ||| |
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|
| T |
11580 |
attaattttttgctcagcaaacaaaggccaagcaatcataggcacacccaacactacactctcaagaactgaattccaaccacaatgagtcaaaaatgca |
11679 |
T |
|
| Q |
366 |
ccaattg |
372 |
Q |
| |
|
||||||| |
|
|
| T |
11680 |
ccaattg |
11686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 380
Target Start/End: Original strand, 560446 - 560503
Alignment:
| Q |
323 |
actctccaaagtagaattccatccactatgtgtcaaaaaggcaccaattgctttgtgt |
380 |
Q |
| |
|
|||||||||| | |||||||| |||| ||| || ||||| |||||||||||||||||| |
|
|
| T |
560446 |
actctccaaaattgaattccaaccacaatgagttaaaaatgcaccaattgctttgtgt |
560503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 372
Target Start/End: Original strand, 894461 - 894534
Alignment:
| Q |
299 |
aatcataggcacaccacaaaccacactctccaaagtagaattccatccactatgtgtcaaaaaggcaccaattg |
372 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||| ||| |||| ||| ||||||| ||||||||| |
|
|
| T |
894461 |
aatcataggcacaccattaaccacactctccaaagttgaaccccaaccacaatgactcaaaaaaccaccaattg |
894534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 392
Target Start/End: Complemental strand, 36742492 - 36742436
Alignment:
| Q |
336 |
gaattccatccactatgtgtcaaaaaggcaccaattgctttgtgtgataaaacttcc |
392 |
Q |
| |
|
|||||||||||||||||||| | |||| |||||| ||||||| ||||| ||||||| |
|
|
| T |
36742492 |
gaattccatccactatgtgttagaaagcaaccaatagctttgtttgatagaacttcc |
36742436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 384
Target Start/End: Complemental strand, 41545717 - 41545660
Alignment:
| Q |
327 |
tccaaagtagaattccatccactatgtgtcaaaaaggcaccaattgctttgtgtgata |
384 |
Q |
| |
|
||||| || ||||||||||||| |||||||||||| ||| |||||||||||||||| |
|
|
| T |
41545717 |
tccaatgttgaattccatccacaatgtgtcaaaaaaatacctattgctttgtgtgata |
41545660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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