View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13262_high_14 (Length: 418)
Name: NF13262_high_14
Description: NF13262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13262_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 11 - 394
Target Start/End: Complemental strand, 36947483 - 36947107
Alignment:
| Q |
11 |
ttattctggttaaccatatcaagatgtactttttcgttattttggttaatcaagtagaacacagttgtgggatgacattttcttgcagccaaatgcaaag |
110 |
Q |
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| T |
36947483 |
ttattctggttaacaatatctagatgcactttttccttattttggttaactatgtagtacacagttgcgggatgacaaaatgttgaagccaaatgcaaag |
36947384 |
T |
|
| Q |
111 |
gtgtgtctccattcctatctttctgatttatcatctgacggtgttcatgaacttcattttctagtatgtagcgtatcacatcatgttttccatgatatgc |
210 |
Q |
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| T |
36947383 |
gggtgtttccattcctatcttcttgatttatcatctgacggtgttcaccaacttgattttcaagtatgtagcgtatcacgtcatgttttccattgcttgc |
36947284 |
T |
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| Q |
211 |
tgcaatgtgaagaatattttgttgaagaaaagtgtcaagcatctctctgggatctggacaatattctaacaacttcttcactacttccacatggccacca |
310 |
Q |
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| T |
36947283 |
tgcaatgtgaagaatattttgttgaagaaaagtgtcgagcatctctctgggatcaggacaatattccaacaacttcttcactacttccacatggccacca |
36947184 |
T |
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| Q |
311 |
gaagatgctaaatgaattggaaaagagccatatatatatgtcatcactttgaattgtgcagcatttgcatttgtcaagtaataa |
394 |
Q |
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| T |
36947183 |
taagatgctagatgaattgggaaataaccat-tat---tg---tccctttgaattgtgcagcatttgcatgtgccaagtaataa |
36947107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 51 - 343
Target Start/End: Complemental strand, 36953877 - 36953585
Alignment:
| Q |
51 |
tttggttaatcaagtagaacacagttgtgggatgacattttcttgcagccaaatgcaaaggtgtgtctccattcctatctttctgatttatcatctgacg |
150 |
Q |
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| T |
36953877 |
tttggttaactaagtagtacacagttctaggatgacatgatcttgctgccaaatgcaaaggggtatctcctttattatctttttgatttatcatcttata |
36953778 |
T |
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| Q |
151 |
gtgttcatgaacttcattttctagtatgtagcgtatcacatcatgttttccatgatatgctgcaatgtgaagaatattttgttgaagaaaagtgtcaagc |
250 |
Q |
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| T |
36953777 |
acgttcactactttgactttgtagaatgtattgcaccacctcatattttccatagtttgatgcaatgtgaagaatattacgctcatgagaagtgtcaagc |
36953678 |
T |
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| Q |
251 |
atctctctgggatctggacaatattctaacaacttcttcactacttccacatggccaccagaagatgctaaatgaattggaaaagagccatat |
343 |
Q |
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| T |
36953677 |
atctctgtgggatcaggacaatattccaacaacttcttcactacttccacatggccaccatacgatgctagatgaattgggaaataaccatat |
36953585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 301 - 399
Target Start/End: Complemental strand, 36964757 - 36964663
Alignment:
| Q |
301 |
atggccaccagaagatgctaaatgaattggaaaagagccatatatatatgtcatcactttgaattgtgcagcatttgcatttgtcaagtaataattcaa |
399 |
Q |
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| T |
36964757 |
atggccaccagaagatgctaaatgaattggaaaagagccatatat----gtcatcactttgaattgtgcagcatttgcatatgccaagtaataattcaa |
36964663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 191 - 343
Target Start/End: Original strand, 37080536 - 37080688
Alignment:
| Q |
191 |
tcatgttttccatgatatgctgcaatgtgaagaatattttgttgaagaaaagtgtcaagcatctctctgggatctggacaatattctaacaacttcttca |
290 |
Q |
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| T |
37080536 |
tcatgttttccattgtatgctgcaacatgaagaatattacgcttaaatgaagtgtcaagcatctctgtgggatctggacagtattctaacaacttctcta |
37080635 |
T |
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| Q |
291 |
ctacttccacatggccaccagaagatgctaaatgaattggaaaagagccatat |
343 |
Q |
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| T |
37080636 |
ctacttccacatggccaccatatgatgctagatgaattgggaaatagccatat |
37080688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 240 - 343
Target Start/End: Original strand, 37070752 - 37070855
Alignment:
| Q |
240 |
aagtgtcaagcatctctctgggatctggacaatattctaacaacttcttcactacttccacatggccaccagaagatgctaaatgaattggaaaagagcc |
339 |
Q |
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| T |
37070752 |
aagtgtcaagcatctcagtgggatctggacagtattctaacaacttctttaccactttcaagtggcctccatgagatgctagatgaattgagaaatagcc |
37070851 |
T |
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| Q |
340 |
atat |
343 |
Q |
| |
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|||| |
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| T |
37070852 |
atat |
37070855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 146
Target Start/End: Original strand, 37070568 - 37070652
Alignment:
| Q |
62 |
aagtagaacacagttgtgggatgacattttcttgcagccaaatgcaaaggtgtgtctccattcctatctttctgatttatcatct |
146 |
Q |
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| T |
37070568 |
aagtaaaaaacagttttgggatgacacgattttgcagccagatgcaaaggagtatctcctttcttatccttttgatttatcatct |
37070652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 51 - 399
Target Start/End: Original strand, 12494369 - 12494710
Alignment:
| Q |
51 |
tttggttaatcaagtagaacacagttgtgggatgacattttcttgcagccaaatgcaaaggtgtgtctccattcctatctttctgatttatcatctgacg |
150 |
Q |
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||||||||| |||||| |||||||||| ||||||||| ||| ||||||||||||||||| || ||||| || ||||||| ||||||||||||| | |
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| T |
12494369 |
tttggttaactaagtagtacacagttgtaggatgacatgatctcgcagccaaatgcaaaggggtatctcctttattatctttttgatttatcatcttatc |
12494468 |
T |
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| Q |
151 |
gtgttcatgaacttcattttctagtatgtagcgtatcacatcatgttttccatgatatgctgcaatgtgaagaatattttgttgaagaaaagtgtcaagc |
250 |
Q |
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| T |
12494469 |
aagtccaggaatttgactttgtagaatgtattgcaccacctcatattttccatattttgatgcaacatgaagaatattacgtttatgagaagtgtcaagc |
12494568 |
T |
|
| Q |
251 |
atctctctgggatctggacaatattctaacaacttcttcactacttccacatggccaccagaagatgctaaatgaattggaaaagagccatatatatatg |
350 |
Q |
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| T |
12494569 |
atctctgtgggatcaggacaatattctaacaactttttcactacttccacatggccaccatatgatgctacatgaattgggaaata-acata---atttg |
12494664 |
T |
|
| Q |
351 |
tcatcactttgaattgtgcagcatttgcatttgtcaagtaataattcaa |
399 |
Q |
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| T |
12494665 |
---tccctttgaattgtgcagcatttgcatttgtcaattaataattcaa |
12494710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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