View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13262_high_15 (Length: 417)
Name: NF13262_high_15
Description: NF13262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13262_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 25496918 - 25496581
Alignment:
| Q |
18 |
aaacttagctacgttcttgatcttaacttaatttcaacatccaatttggtnnnnnnnnn---------tccaatttggcacattgtttaacatccttaaa |
108 |
Q |
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| T |
25496918 |
aaacttagctacgttcttgatcttaacttaatttcaacatccaatttggttccctcaaaaaaaaaaaatccaatttggcacattgtttaacatccttaaa |
25496819 |
T |
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| Q |
109 |
aatcattttcgatattttaattatgtgtttatttgtttgaaccaagtcactgtttctagagttagattcaaactcatgacattcnnnnnnnnnnn--ata |
206 |
Q |
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| T |
25496818 |
aatcattttcgatattttagttatgtgtttatttgtttgaaccaaatcactatttctagagttagattcaaactcatgacatttttttttattttttata |
25496719 |
T |
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| Q |
207 |
aaatcattttgatttgatatacatactttacagattcttaagaaaattaagtatgttattttgtgtttgttcaaaagctaatctaagtaacttttgattt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25496718 |
aaatcattttgatttgatatacatactttacagattcttaagaaaattaagtatgttattttgtgtttgttcaaaagctaatctaagtaacttttgattt |
25496619 |
T |
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| Q |
307 |
tcatcataagaatgtttttttccttaacaaaacgattt |
344 |
Q |
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| T |
25496618 |
tcatcataagaatgtttttttccttaacaaaacgattt |
25496581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 362 - 410
Target Start/End: Complemental strand, 25496555 - 25496507
Alignment:
| Q |
362 |
cttattcatgaacataactaaaacaataaaaatgattttagaataatct |
410 |
Q |
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| T |
25496555 |
cttattcatgaacataactaaaacaataaaaatgatttttgaataatct |
25496507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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