View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13262_high_2 (Length: 723)

Name: NF13262_high_2
Description: NF13262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13262_high_2
NF13262_high_2
[»] chr5 (1 HSPs)
chr5 (16-716)||(26380328-26381025)


Alignment Details
Target: chr5 (Bit Score: 647; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 647; E-Value: 0
Query Start/End: Original strand, 16 - 716
Target Start/End: Complemental strand, 26381025 - 26380328
Alignment:
Q  16 tcattctcttgaaagataaaactattatcacatttaaaagccactggttcctcaataggtctagtaggataaagagattgaggaagctgttgaagtcccc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26381025 tcattctcttgaaagataaaactattatcacatttaaaagccactggttcctcaataggtctagtaggataaagagattgaggaagctgttgaagtcccc 26380926  T
Q  116 tattggaaggaaaataaagtggtgttgaaggaacattgtttacatttggagtagtagtgtacatgataggatttgttgtaacatcccatgatcctaaatc 215  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26380925 tattagaaggaaaataaagtggtgttgaaggaacattgtttacatttggagtagtagtgtacatgataggatttgttgtaacatcccatgatcctaaatc 26380826  T
Q  216 attctccattccaaaagaagaccctcttggtgaaggatacacaacatgttgttcataagggttataaggcgaagaaaaagacgggttttgcagctgaacc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26380825 attctccattccaaaagaagaccctcttggtgaaggatacacaacatgttgttcataagggttataaggcgaagaaaaagacgggttttgcagctgaacc 26380726  T
Q  316 ggaacaactctacctctacctctaccataacaaactccatgaccataaggagcattgtttccaagatcaatagaagaacccatttgagatattccagtaa 415  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26380725 ggaacaactctacctctacctctaccataacaaactccattaccataaggaacattgtttccaagatcaatagaagaacccatttgagatattccagtaa 26380626  T
Q  416 aggtgtgacctttttgcataccccacttgatattttcagaaactaaaccttgtggattttgtgaaaccccaaaagttgaggcttttggactaccaccac- 514  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26380625 aggtgtgacctttttgcataccccacttgatattttcagaaactaaaccttgtggattttgtgaaaccccaaaagttgaggcttttggactaccaccacc 26380526  T
Q  515 --cacccatgttttggtaacgtgggtgtgttactgttactgtttcatcatcaacaacgttgttattgttgttgttgtatgcatgagattcccaaaaacga 612  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||| |    
T  26380525 accacccatgttttggtaacgtgggtgtgttactgttactgtttcatcatcaacaacgttgtta------ttgttgtatgcatgagattcccaaaaacaa 26380432  T
Q  613 ggcatgttagtgaatgattcaacaagattgttattactattattacctctgattctggacatgttgttaacaacgttgctaggttgagaatgttgttgat 712  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26380431 ggcatgttagtgaatggttcaacaagattgttattactattattacctctgattctggacatgttgttaacaacgttgctaggttgagaatgttgttgat 26380332  T

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